ZFIN ID: ZDB-GENE-990630-14

ZFIN ID: ZDB-GENE-990630-14

Mapping Details

Gene Name:	clock circadian regulator a
Symbol:	clocka

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
Vega	20	22,168,487 - 22,170,421	GRCv10
Vega	20	22,167,664 - 22,276,330	GRCv10
NCBI Map Viewer	20	22,068,967 - 22,176,005	GRCz11

Mapped Clones containing clocka
CH211-278F21	Chr: 20 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
ihb741	20	22,154,102 - 22,154,109	GRCz11	Zebrafish Nomenclature Committee
ihb742	20	22,154,110 - 22,154,114	GRCz11	Zebrafish Nomenclature Committee
sa14713	20	22,145,175	GRCz11	Busch-Nentwich et al., 2013
	20	22,245,502	GRCz10	Busch-Nentwich et al., 2013
	20	22,217,335	Zv9	Busch-Nentwich et al., 2013
sa17257	20	22,160,599	GRCz11	Busch-Nentwich et al., 2013
	20	22,260,926	GRCz10	Busch-Nentwich et al., 2013
	20	22,232,759	Zv9	Busch-Nentwich et al., 2013
sa23683	20	22,150,383	GRCz11	Busch-Nentwich et al., 2013
	20	22,250,710	GRCz10	Busch-Nentwich et al., 2013
	20	22,222,543	Zv9	Busch-Nentwich et al., 2013
sa37017	20	22,163,585	GRCz11	Busch-Nentwich et al., 2013
	20	22,263,912	GRCz10	Busch-Nentwich et al., 2013
	20	22,235,745	Zv9	Busch-Nentwich et al., 2013
sa39276	20	22,144,552	GRCz11	Busch-Nentwich et al., 2013
	20	22,244,879	GRCz10	Busch-Nentwich et al., 2013
	20	22,216,712	Zv9	Busch-Nentwich et al., 2013
dg3	20		GRCz11
	20		GRCz11
	20		GRCz11
	20		GRCz11
ihb741	20		GRCz11
	20		GRCz11
ihb742	20		GRCz11
	20		GRCz11
sa14713	20		GRCz11
	20		GRCz11
sa17257	20		GRCz11
	20		GRCz11
sa23683	20		GRCz11
	20		GRCz11
sa37017	20		GRCz11
	20		GRCz11
sa39276	20		GRCz11
	20		GRCz11

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z3211	SSLP	20		Tan et al., 2008	Tan et al. (2008. J. Neurogenet. 22(2): 149-166) report mapping the clock gene ...

Chr 20

Tan et al. (2008. J. Neurogenet. 22(2): 149-166) report mapping the clock gene to LG20 on the T51 ...

Genomic Feature dg3 is an allele of clocka

Marker	Type	Chr	Distance	Publication / Person	Comments
z3211	SSLP	20	1.2 cM	Tan et al., 2008	Tan et al. (2008. J. Neurogenet. 22(2): 149-166) reports mapping dg3 to LG20, ...
z3964	SSLP	20	3.6 cM	Tan et al., 2008	Tan et al. (2008. J. Neurogenet. 22(2): 149-166) reports mapping dg3 to LG20, ...