ZFIN ID: ZDB-GENE-990415-238

Mapping Details

Gene Name: retinal homeobox gene 3
Symbol: rx3
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position
ZFIN Gbrowse 21 10,756,154 - 10,759,223
Ensembl 21 10,756,154 - 10,759,223
Vega 21 10,663,526 - 10,666,595
NCBI Map Viewer 21 10,756,265 - 10,759,223
UCSC 21 -
Mapped Clones containing rx3
CH211-233A1 Chr: 21 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
s399 21 10,757,057 GRCz11 Loosli et al., 2003
sa29528 21 10,757,122 GRCz11 Busch-Nentwich et al., 2013
21 10,664,494 GRCz10 Busch-Nentwich et al., 2013
21 9,292,441 Zv9 Busch-Nentwich et al., 2013
t25181 21 10,757,004 GRCz11 Rojas-Munoz et al., 2005
t25327 21 10,758,387 GRCz11 Rojas-Munoz et al., 2005
w29 21 10,757,057 GRCz11 ZFIN Curated Data

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
21 50.9 cM rx3 Mother of Pearl (MOP) Postlethwait, John H. Data
21 42.7 cM rx3 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z17336 SSLP 21 Rojas-Munoz et al., 2005 rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068  ...
z12068 SSLP 21 Rojas-Munoz et al., 2005 rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068  ...

OTHER MAPPING INFORMATION
Chr 21 Rojas-Munoz et al., 2005 rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068 (5/48 recombinants).
Genomic Feature s399 is an allele of rx3
Marker Type Chr Distance Publication / Person Comments
z10432 SSLP 21 Loosli et al., 2003
Genomic Feature w29 is an allele of rx3
Marker Type Chr Distance Publication / Person Comments
z7925 SSLP 21 Kennedy et al., 2004 Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to rx3 using SSLPs.
z10432 SSLP 21 Kennedy et al., 2004 Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to rx3 using SSLPs.
Genomic Feature s399 is an allele of rx3
Chr 21 Loosli et al., 2003
Genomic Feature w29 is an allele of rx3
Chr 21 Kennedy et al., 2004 Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to  ...