ZFIN ID: ZDB-GENE-980528-2059

ZFIN ID: ZDB-GENE-980528-2059

Mapping Details

Gene Name:	bone morphogenetic protein 4
Symbol:	bmp4

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	17	56,628,261 - 56,649,377	GRCz12tu
NCBI Map Viewer	17	56,628,261 - 56,649,377	GRCz12tu
Ensembl	17	50,564,070 - 50,586,135	GRCz11
NCBI Map Viewer	17	50,564,103 - 50,586,135	GRCz11
UCSC	17	-	GRCz11
Vega	17	50,485,001 - 50,507,066	GRCv10

Mapped Clones containing bmp4
CH211-287A24	Chr: 17 Details
CH73-374D11	Chr: 17 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
b1150	17	50,584,570	GRCz11	DIRECT		Lenhart et al., 2011
ouc1003	17	50,574,389	GRCz11	DIRECT		Chen et al., 2023
sa36537	17	56,647,712	GRCz12tu	DIRECT		Sealy et al., 2025
	17	50,584,570	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	50,505,501	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	51,114,684	Zv9	DIRECT		Busch-Nentwich et al., 2013
st72	17	50,584,131	GRCz11	DIRECT		ZFIN Curated Data
umo32	17	50,574,163 - 50,574,167	GRCz11	DIRECT		Zebrafish Nomenclature Committee
la010179Tg	17	51,095,488 - 51,095,498	Zv9	ZFIN_Zv9	BurgessLin
la013167Tg	17	51,094,290 - 51,094,300	Zv9	ZFIN_Zv9	BurgessLin
b1149	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
b1150	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
b1172	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
la010179Tg	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
la013167Tg	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
ouc1003	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa36537	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
st37	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	linkagesDirectMem2
	17		GRCz11	OTHER_MAPPING	linkagesDirectMem1
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
st72	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
umo32	17		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
17	67.7 cM	bmp4	Boston MGH Cross (MGH)	Fishman, Mark C.	Data
17	197.2 cM	bmp4	Mother of Pearl (MOP)	Postlethwait, John H.	Data
17	413.93 cR	bmp4	Loeb/NIH/5000/4000 (LN54)	Johnson, Stephen L.	Data
17	4952.0 cR	bmp4	Goodfellow T51 (T51)	Geisler, Robert	Data
17	113.5 cM	bmp4	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z9692	SSLP	17		Stickney et al., 2007	mutation mapped by Stickney et al. (2007)
z11340	SSLP	17		Stickney et al., 2007	mutation mapped by Stickney et al. (2007)
st37	Feature	17	0.0 cM	Stickney et al., 2007	mutation mapped by Stickney et al. (2007)

Genomic Feature st37 is an allele of bmp4

Marker	Type	Chr	Distance	Publication / Person	Comments
bmp4	GENE	17	0.0 cM	Stickney et al., 2007	mutation mapped by Stickney et al. (2007)
z9692	SSLP	17		Stickney et al., 2007	mutation mapped by Stickney et al. (2007)
z11340	SSLP	17		Stickney et al., 2007	mutation mapped by Stickney et al. (2007)

Primer Sets:
Strain	Bandsize	Annealing Temperature [C]
AB	NA
Forward Primer	CTGTGAGGAGCTTCCATCACGAA
Reverse Primer	GGAATCGGCAGAGGCTGTCTCC
IND	NA
Forward Primer	CTGTGAGGAGCTTCCATCACGAA
Reverse Primer	GGAATCGGCAGAGGCTGTCTCC
SJD	307	36.0
Forward Primer	TAGGCTGGAACGACTGGATT
Reverse Primer	TGTCCACGTGTGGATGTTTT