ZFIN ID: ZDB-GENE-050302-80

Mapping Details

Gene Name: signal peptide, CUB domain, EGF-like 2
Symbol: scube2
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 7 28,607,915 - 28,650,300 GRCz12tu
NCBI Map Viewer 7 28,607,915 - 28,650,300 GRCz12tu
Ensembl 7 28,569,266 - 28,611,145 GRCz11
NCBI Map Viewer 7 28,569,266 - 28,611,116 GRCz11
UCSC 7 - GRCz11
Vega 7 28,298,073 - 28,339,952 GRCv10
Mapped Clones containing scube2
DKEY-288D4 Chr: 7 Details
DKEY-181F22 Chr: 7 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
as403 7 28,610,973 - 28,610,975 GRCz11 DIRECT Tsao et al., 2021
as404 7 28,610,973 - 28,610,979 GRCz11 DIRECT Tsao et al., 2021
rw87 7 28,604,868 GRCz11 DIRECT Kawakami et al., 2005
sa14283 7 28,626,360 GRCz12tu DIRECT Sealy et al., 2025
7 28,587,176 GRCz11 DIRECT Busch-Nentwich et al., 2013
7 28,315,983 GRCz10 DIRECT Busch-Nentwich et al., 2013
7 29,923,460 Zv9 DIRECT Busch-Nentwich et al., 2013
sa38613 7 28,649,633 GRCz12tu DIRECT Sealy et al., 2025
7 28,610,449 GRCz11 DIRECT Busch-Nentwich et al., 2013
7 28,339,256 GRCz10 DIRECT Busch-Nentwich et al., 2013
7 29,946,733 Zv9 DIRECT Busch-Nentwich et al., 2013
tm146c 7 28,605,087 GRCz11 DIRECT Hollway et al., 2006
ty97 7 28,586,771 GRCz11 DIRECT Kawakami et al., 2005
tz310b 7 28,586,756 GRCz11 DIRECT Kawakami et al., 2005
la025949Tg 7 29,942,232 - 29,942,242 Zv9 ZFIN_Zv9 BurgessLin
la029316Tg 7 29,946,948 - 29,946,958 Zv9 ZFIN_Zv9 BurgessLin
ty97 7 GRCz11 GENERAL_LOAD load data [singleton]
as403 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
as404 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
la025949Tg 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la029316Tg 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
rw87 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa14283 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa38613 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
tm146c 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
ty97 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING directMappedMarker
7 GRCz11 OTHER_MAPPING paneledMarkersDirect
7 GRCz11 OTHER_MAPPING linkagesDirectMem2
7 GRCz11 OTHER_MAPPING linkagesDirectMem1
tz310b 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z11119 SSLP 7 Hollway et al., 2006 Marker z11119 was found to be non-recombinant in 1400 meioses.
z11119 SSLP 7 Kawakami et al., 2005  ...
z24045 SSLP 7 Kawakami et al., 2005  ...
slc7a6 GENE 7 Kawakami et al., 2005  ...
adgrg1 GENE 7 Kawakami et al., 2005  ...
dennd2b GENE 7 Kawakami et al., 2005  ...
slc7a6os GENE 7 Kawakami et al., 2005  ...

OTHER MAPPING INFORMATION
Chr 7 Kawakami et al., 2005 Kawakami+A+et+al+mapped+the+you+mutation+between+z11119+and+z24045+on+LG+7%2e+This+critical+region+w  ...
Chr 7 Hollway et al., 2006 Marker z11119 was found to be non-recombinant in 1400 meioses.
Markers Encoded by scube2
fc27f08 Chr: 7 Details
Genomic Feature ty97 is an allele of scube2
Chr Location Mapped As Panel Mapped By Scoring
7 40.5 cM ty97 Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature ty97 is an allele of scube2
Marker Type Chr Distance Publication / Person Comments
z15270 SSLP 7 Woods et al., 2005
z11119 SSLP 7 Woods et al., 2005
Genomic Feature ty97 is an allele of scube2
Chr 7 Woods et al., 2005
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.