ZFIN ID: ZDB-GENE-030131-8415

Mapping Details

Gene Name: collagen, type I, alpha 2
Symbol: col1a2
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 19 43,612,713 - 43,631,831 GRCz12tu
NCBI Map Viewer 19 43,612,713 - 43,631,831 GRCz12tu
Ensembl 19 40,983,221 - 41,002,980 GRCz11
NCBI Map Viewer 19 40,983,221 - 41,002,336 GRCz11
UCSC 19 - GRCz11
Vega 19 41,396,101 - 41,415,860 GRCv10
Mapped Clones containing col1a2
DKEY-104M9 Chr: 19 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
ca108 19 40,989,583 GRCz11 DIRECT Rajan et al., 2020
cmg136 19 43,620,402 GRCz12tu DIRECT Vanhooydonck et al., 2025
cmg137 19 43,623,515 GRCz12tu DIRECT Vanhooydonck et al., 2025
cmg138 19 43,627,033 GRCz12tu DIRECT Vanhooydonck et al., 2025
ihb230 19 40,990,941 - 40,990,942 GRCz11 DIRECT ZFIN Staff
sa1763 19 43,614,656 GRCz12tu DIRECT Sealy et al., 2025
19 40,985,164 GRCz11 DIRECT Busch-Nentwich et al., 2013
19 41,398,044 GRCz10 DIRECT Busch-Nentwich et al., 2013
19 41,945,790 Zv9 DIRECT Busch-Nentwich et al., 2013
sa17981 19 43,617,039 GRCz12tu DIRECT Sealy et al., 2025
19 40,987,547 GRCz11 DIRECT Busch-Nentwich et al., 2013
19 41,400,427 GRCz10 DIRECT Busch-Nentwich et al., 2013
19 41,948,173 Zv9 DIRECT Busch-Nentwich et al., 2013
sa32257 19 43,628,223 GRCz12tu DIRECT Sealy et al., 2025
19 40,998,731 GRCz11 DIRECT Busch-Nentwich et al., 2013
19 41,411,611 GRCz10 DIRECT Busch-Nentwich et al., 2013
19 41,959,357 Zv9 DIRECT Busch-Nentwich et al., 2013
sa36897 19 43,628,712 GRCz12tu DIRECT Sealy et al., 2025
19 40,999,220 GRCz11 DIRECT Busch-Nentwich et al., 2013
19 41,412,100 GRCz10 DIRECT Busch-Nentwich et al., 2013
19 41,959,846 Zv9 DIRECT Busch-Nentwich et al., 2013
la013496Tg 19 41,949,461 - 41,949,471 Zv9 ZFIN_Zv9 BurgessLin
ca108 19 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
dmh15 19 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
ihb230 19 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
la013496Tg 19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
19 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa1763 19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
19 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa17981 19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
19 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa32257 19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
19 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa36897 19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
19 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
19 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
19 99.1 cM col1a2 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
dlx6a GENE 19 Fisher et al., 2003 Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a2 gene to LG 19  ...
z11403 SSLP 19 Fisher et al., 2003 Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a2 gene to LG 19  ...
z6661 SSLP 19 Fisher et al., 2003 Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a2 gene to LG 19  ...
z7265 SSLP 19 Fisher et al., 2003 Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a2 gene to LG 19  ...

OTHER MAPPING INFORMATION
Chr 19 Fisher et al., 2003 Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a2 gene to LG 19 between Z11403 and Z7265  ...
Markers Encoded by col1a2
fb11d06 Chr: 19 Details
fa98d05 Chr: 19 Details
fa99g10 Chr: 19 Details
fb04c08 Chr: 19 Details
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