Genomic Feature

ca108

ID
ZDB-ALT-210806-1
Name
ca108
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Peng Huang Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 19
Variants
Variant Type
Small Deletion
Variant Location
Chr 19: 40989583 (GRCz11) (1) Details
Nucleotide change
G/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
1 bp deleted in Exon 12 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
TTTGGGAAAAGCTGGTAACCTCTGACATTCATAAAAATATTCTGAGGAAGTTAGTGGTTACTGCTTTCCAACATTCTTCAAAATATCTTCTTTTTGTGTCAAACTGAAAAAATAAATGTATACAGGTATGAAACAAGTGGAGGATGAGTAACGTTAGTTCTCTTCTAACCACTACAACAACAATTTTACCAACTTTTATGCAGTGAATTAGTGGATTTTATAGGCAAAATTTGTAATAATTGTGAATATGTTGTCCAAGTTACAAAAAAATGCAATTTTGGAATCTTAATTTGTAAGAGTGTACTTAAAGAAACAATATTTGTTGTTCTGATATGTTTTAATGTTCTGACTTCAACACAAGGTTCGACACAAATAAAATATTACAATTTACATTATCATATTTTCTAGTCCATATAATGAATAAATTCAAATGCATTGCATTAGATTTATTTTAAAGACTCACATTTGCCTTTTTTAACAGGGTGAAAATGGTGCCGCTG
G/- ATCAAATGGAACCCCCGGACAGAGAGTAAGCCAAACATTATTAATAAGAAAAAGTGTATTATTATTATTGAAATTTTACAAGACCTACTTATTTGAACTGTTCACTTTGGTTCGTACCTCATTTCTCGTGTTGTACAGGGTGGTCGTGGTCTTCCTGGTGAGAGAGGTCGTGTTGGCCCTGCTGGCCCAGCTGGTGCTCGCGGTGCTGATGGTAACACTGGTCCTGCTGGCCCTGCTGTGAGCATCTGCCCTTTGACTCCTGAAATGTGTCATATGGTGGAGCTCGAATGTGGAAGTAACACATTTTCTTTCCTTTCAGGGACCTTTGGGCTCAGCTGGTCCTCCTGGTTTCCCTGGTGCACCTGGACCCAAGGTATATAAATGAAATATAAATGAAATCGAAATATAAAGCTAGCCCGGAGCATCTGTGTGAAATAATGTGGCTAGAAGATTAACAGACATGCTGCCAGTTCATATCTTTTGATTAGATCTAATGCTAC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
col1a2ca108/ca108Homozygous♀+/- ♂+/-Fig 6 with image from Rajan et al., 2020
col1a2ca108/+Heterozygous♀+/- ♂+/-Fig 6 with image from Rajan et al., 2020
col1a2ca108/ca108; col5a1ca109/ca109ComplexFig 6 with image from Rajan et al., 2020
col1a2ca108/ca108; col5a1ca109/ca109; la116TgComplex
col1a2ca108/+; col5a1ca109/ca109ComplexFig 6 with image from Rajan et al., 2020
col1a2ca108/+; col5a1ca109/ca109; la116TgComplexFig 6 with image from Rajan et al., 2020
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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