ZFIN ID: ZDB-GENE-990415-171

ZFIN ID: ZDB-GENE-990415-171

Mapping Details

Gene Name:	cadherin 2, type 1, N-cadherin (neuronal)
Symbol:	cdh2

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	20	17,739,923 - 17,819,238	GRCz11
Ensembl	20	17,739,923 - 17,819,238	GRCz11
Vega	20	17,840,340 - 17,919,655	GRCv10
NCBI Map Viewer	20	17,740,104 - 17,819,238	GRCz11
UCSC	20	-	GRCz11

Mapped Clones containing cdh2
DKEYP-38F5	Chr: 20 Details
CH73-317E11	Chr: 20 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
fr7	20	17,802,963	GRCz11	Lele et al., 2002
hi1389Tg	20	17,745,615 - 17,745,616	GRCz11	ZFIN Curated Data
hi3096Tg	20	17,746,175 - 17,746,176	GRCz11	ZFIN Curated Data
hi3644Tg	20	17,746,387 - 17,746,388	GRCz11	ZFIN Curated Data
m117	20	17,791,592	GRCz11	ZFIN Curated Data
rw95	20	17,803,604	GRCz11	Masai et al., 2003
sa206	20	17,743,502	GRCz11	Busch-Nentwich et al., 2013
	20	17,843,919	GRCz10	Busch-Nentwich et al., 2013
	20	17,789,419	Zv9	Busch-Nentwich et al., 2013
sa11989	20	17,803,635	GRCz11	Busch-Nentwich et al., 2013
	20	17,904,052	GRCz10	Busch-Nentwich et al., 2013
	20	17,849,552	Zv9	Busch-Nentwich et al., 2013
sa15918	20	17,803,010	GRCz11	Busch-Nentwich et al., 2013
	20	17,903,427	GRCz10	Busch-Nentwich et al., 2013
	20	17,848,927	Zv9	Busch-Nentwich et al., 2013
sa16882	20	17,743,578	GRCz11	Busch-Nentwich et al., 2013
	20	17,843,995	GRCz10	Busch-Nentwich et al., 2013
	20	17,789,495	Zv9	Busch-Nentwich et al., 2013
sa32283	20	17,803,605	GRCz11	Busch-Nentwich et al., 2013
	20	17,904,022	GRCz10	Busch-Nentwich et al., 2013
	20	17,849,522	Zv9	Busch-Nentwich et al., 2013
tb8	20	17,798,887	GRCz11	Warga et al., 2007
tm101	20	17,803,003	GRCz11	Lele et al., 2002
la013796Tg	20	17,791,696 - 17,791,706	Zv9
la021425Tg	20	17,793,303 - 17,793,313	Zv9
la021426Tg	20	17,793,465 - 17,793,475	Zv9
la021427Tg	20	17,809,294 - 17,809,304	Zv9

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
20	487.37 cR	ncad	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
20	1948.0 cR	cdh2	Goodfellow T51 (T51)	Palardy, Greg	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z3964	SSLP	20		Lele et al., 2002	Lele et al. 2002 (Development 129:3281-3294) report mapping cdh2 to Linkage Group 20, indistinguishably close to SSLP marker z3964.
z9343	SSLP	20	0.35 cM	Masai et al., 2003	Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z7171	SSLP	20		Masai et al., 2003	Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z21170	SSLP	20		Masai et al., 2003	Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z3954	SSLP	20		Masai et al., 2003	Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z23564	SSLP	20		Masai et al., 2003	Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z9794	SSLP	20		Masai et al., 2003	Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z10056	SSLP	20		Masai et al., 2003	Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z3964	SSLP	20	0.23 cM	Warga et al., 2007
z6425	SSLP	20	0.69 cM	Warga et al., 2007

Chr 20

Lele et al., 2002

Lele et al. 2002 (Development 129:3281-3294) report mapping cdh2 to Linkage Group 20, ...

Markers Encoded by cdh2
ft03g07 Chr: 20 Details

Genomic Feature tg1a is an allele of cdh2