ZFIN ID: ZDB-GENE-001205-1

Mapping Details

Gene Name: colony stimulating factor 1 receptor, a
Symbol: csf1ra
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 14 3,641,103 - 3,680,845 GRCz12tu
NCBI Map Viewer 14 3,641,103 - 3,680,845 GRCz12tu
Ensembl 14 3,143,337 - 3,174,570 GRCz11
Ensembl 14 3,123,517 - 3,132,188 GRCz11
NCBI Map Viewer 14 3,143,147 - 3,182,282 GRCz11
NCBI Map Viewer 14 3,121,427 - 3,133,529 GRCz11
UCSC 14 - GRCz11
Vega 14 3,170,816 - 3,202,049 GRCv10
Vega 14 3,150,996 - 3,159,667 GRCv10
Mapped Clones containing csf1ra
CH1073-425O22 Chr: 14 Details
ZFOS-1069F5 Chr: 14 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
j4blue 14 3,153,746 - 3,153,750 GRCz11 DIRECT Parichy et al., 2000
j4e1 14 3,162,473 GRCz11 DIRECT Parichy et al., 2000
j4e2 14 3,171,713 GRCz11 DIRECT Parichy et al., 2000
nku3 14 3,171,232 - 3,171,316 GRCz11 DIRECT Meng et al., 2021
re25 14 3,154,287 GRCz11 DIRECT Berdowski et al., 2022
re26 14 3,154,289 - 3,154,293 GRCz11 DIRECT Berdowski et al., 2022
sa9484 14 3,659,355 GRCz12tu DIRECT Sealy et al., 2025
14 3,161,596 GRCz11 DIRECT Busch-Nentwich et al., 2013
14 3,189,075 GRCz10 DIRECT Busch-Nentwich et al., 2013
15 43,686,401 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15067 14 3,667,443 GRCz12tu DIRECT Sealy et al., 2025
14 3,169,634 GRCz11 DIRECT Busch-Nentwich et al., 2013
14 3,197,113 GRCz10 DIRECT Busch-Nentwich et al., 2013
15 43,678,363 Zv9 DIRECT Busch-Nentwich et al., 2013
sa22726 14 3,652,244 GRCz12tu DIRECT Sealy et al., 2025
14 3,154,485 GRCz11 DIRECT Busch-Nentwich et al., 2013
14 3,181,964 GRCz10 DIRECT Busch-Nentwich et al., 2013
15 43,693,512 Zv9 DIRECT Busch-Nentwich et al., 2013
t36ui 14 3,166,793 - 3,166,797 GRCz11 DIRECT Hason et al., 2022
j4e1 14 GRCz11 GENERAL_LOAD load data [singleton]
csf1ra_unspecified 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
j4blue 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
j4e1 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING linkagesDirectMem2
14 GRCz11 OTHER_MAPPING linkagesDirectMem1
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
j4e2 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
mh5 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
nku3 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
re25 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
re26 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa9484 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa15067 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa22726 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
t36ui 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tb213c 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tc227b 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
te220 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tf34 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tf238b 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tg17 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tg283a 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tl241 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tm236b 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tm246b 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tp71c 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tq211 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING directMappedMarker
14 GRCz11 OTHER_MAPPING paneledMarkersDirect
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
tt254a 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
utr4e174A 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
utr4e536 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
utr4e564 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z1536 SSLP 14 Parichy et al., 2000 Parichy, et al. (2000. Dev 127:3031-3044.) mapped csf1r between z5435 and z1536. This map position is supported by them mapping pantherj4e1 to the same interval using a combination of half tetrad centromere linkage analysis and a 161 individual mapping panel. Mutant locus panther corresponds to csf1r.
z5435 SSLP 14 Parichy et al., 2000 Parichy, et al. (2000. Dev 127:3031-3044.) mapped csf1r between z5435 and z1536. This map position is supported by them mapping pantherj4e1 to the same interval using a combination of half tetrad centromere linkage analysis and a 161 individual mapping panel. Mutant locus panther corresponds to csf1r.

OTHER MAPPING INFORMATION
Chr 14 Parichy et al., 2000 Parichy, et al. (2000. Dev 127:3031-3044.) mapped csf1r between z5435 and z1536. This map  ...
Genomic Feature tq211 is an allele of csf1ra
Chr Location Mapped As Panel Mapped By Scoring
14 20.8 cM tq211 Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature j4e1 is an allele of csf1ra
Marker Type Chr Distance Publication / Person Comments
z1536 SSLP 14 Parichy et al., 2000 Parichy, et al. (2000. Dev 127:3031-3044.) used half tetrad centromere linkage analysis to map pantherj4e1 to LG14. They refined the location between z5435 and z1536 using a 161 individual mapping panel.
z5435 SSLP 14 Parichy et al., 2000 Parichy, et al. (2000. Dev 127:3031-3044.) used half tetrad centromere linkage analysis to map pantherj4e1 to LG14. They refined the location between z5435 and z1536 using a 161 individual mapping panel.
Genomic Feature j4e1 is an allele of csf1ra
Chr 14 Parichy et al., 2000 Parichy, et al. (2000. Dev 127:3031-3044.) used half tetrad centromere linkage analysis to map  ...
Genomic Feature tf34 is an allele of csf1ra
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