ZFIN ID: ZDB-GENE-990415-111

Mapping Details

Gene Name: homeobox C11a
Symbol: hoxc11a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 23 39,178,950 - 39,181,865 GRCz12tu
NCBI Map Viewer 23 39,178,950 - 39,181,865 GRCz12tu
Ensembl 23 36,074,798 - 36,078,132 GRCz11
NCBI Map Viewer 23 36,074,880 - 36,077,759 GRCz11
UCSC 23 - GRCz11
Vega 23 35,975,995 - 35,979,329 GRCv10
Mapped Clones containing hoxc11a
DKEY-81P22 Chr: 23 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa17170 23 39,181,099 GRCz12tu DIRECT Sealy et al., 2025
23 36,076,993 GRCz11 DIRECT Busch-Nentwich et al., 2013
23 35,978,190 GRCz10 DIRECT Busch-Nentwich et al., 2013
23 36,128,537 Zv9 DIRECT Busch-Nentwich et al., 2013
sud141 23 36,075,509 - 36,075,514 GRCz11 DIRECT Adachi et al., 2024
sud161 23 36,075,510 - 36,075,511 GRCz11 DIRECT Adachi et al., 2024
sa17170 23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sud141 23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sud161 23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
23 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
hoxc4a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc6a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc8a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc3a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc9a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc5a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc10a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc13a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.
hoxc1a GENE 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a, hoxc11a, hoxc10a, hoxc9a, hoxc8a, hoxc6a, hoxc5a, hoxc4a, hoxc3a, and hoxc1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG23.

OTHER MAPPING INFORMATION
Chr 23 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13a,  ...
Genomic Feature sud161 is an allele of hoxc11a