Gene

hoxc9a

ID

ZDB-GENE-000328-5

Name

homeobox C9a

Symbol

hoxc9a Nomenclature History

Previous Names

BZ-39
bz39
hoxc9
zgc:109844

Type

protein_coding_gene

Location

Chr: 23 Mapping Details/Browsers

Description

Predicted to have DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of vasculogenesis and positive regulation of lymphangiogenesis. Predicted to localize to nucleus. Is expressed in several structures, including CNS interneuron; axial vasculature; neural tube; pectoral fin bud; and spinal cord. Orthologous to human HOXC9 (homeobox C9).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

13 figures from 6 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:109844 (10 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 2 figures from Stoll et al., 2013
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With hoxc9a Human Ortholog

No data available

Associated With hoxc9a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR017970	Homeobox, conserved site
Domain	IPR001356	Homeodomain
Domain	IPR006711	Hox9, N-terminal activation domain
Domain	IPR020479	Homeodomain, metazoa
Family	IPR017112	Homeobox protein HXA9/HXB9/HXC9
Family	IPR050803	Abd-B homeobox transcription factor
Homologous_superfamily	IPR009057	Homedomain-like superfamily