ZFIN ID: ZDB-GENE-000822-3

Mapping Details

Gene Name:	homeobox C11b
Symbol:	hoxc11b

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	11	2,208,103 - 2,212,878	GRCz12tu
NCBI Map Viewer	11	2,208,103 - 2,212,878	GRCz12tu
Ensembl	11	2,180,072 - 2,185,174	GRCz11
NCBI Map Viewer	11	2,180,006 - 2,183,981	GRCz11
Vega	11	2,121,848 - 2,125,699	GRCv10

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa35003	11	2,209,704	GRCz12tu	DIRECT		Sealy et al., 2025
	11	2,181,607	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	11	2,124,129	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	11	2,171,676	Zv9	DIRECT		Busch-Nentwich et al., 2013
sud124b	11	2,180,168 - 2,180,178	GRCz11	DIRECT		Yamada et al., 2021
sud128	11	2,180,168 - 2,180,180	GRCz11	DIRECT		Adachi et al., 2024
sud162a	11	2,180,169 - 2,180,176	GRCz11	DIRECT		Adachi et al., 2024
sa35003	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sud124b	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sud128	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sud162a	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
hoxc13b	GENE	11		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc12b	GENE	11		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc6b	GENE	11		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
mir196c	MIRNAG	11		Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196a.2b between hoxc6b and hoxc11b.
hoxc6b	GENE	11		Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196a.2b between hoxc6b and hoxc11b.

Chr 11	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, ...
Chr 11	Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196a.2b between hoxc6b and ...

Genomic Feature sud128 is an allele of hoxc11b