ZFIN ID: ZDB-GENE-980526-125

Mapping Details

Gene Name:	hairy-related 1
Symbol:	her1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	5	74,813,821 - 74,820,527	GRCz12tu
NCBI Map Viewer	5	74,813,821 - 74,820,527	GRCz12tu
Ensembl	5	68,788,658 - 68,795,063	GRCz11
NCBI Map Viewer	5	68,788,658 - 68,795,049	GRCz11
UCSC	5	-	GRCz11
Vega	5	68,017,991 - 68,024,396	GRCv10

Mapped Clones containing her1
CH211-283H6	Chr: 5 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
ci301	5	68,794,592 - 68,794,593	GRCz11	DIRECT	Zinani et al., 2020
ci302	5	68,794,592 - 68,794,593	GRCz11	DIRECT	Zinani et al., 2020
hu2124	5	68,794,546	GRCz11	DIRECT	Choorapoikayil et al., 2012
kt1060	5	68,794,585 - 68,794,609	GRCz11	DIRECT	Yabe et al., 2023
sa40604	5	74,820,002	GRCz12tu	DIRECT	Sealy et al., 2025
	5	68,794,552	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	5	68,023,885	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	5	71,699,267	Zv9	DIRECT	Busch-Nentwich et al., 2013
zf2173	5	68,794,631 - 68,794,632	GRCz11	DIRECT	LLeras Forero et al., 2018
ci301	5		GRCz11	OTHER_MAPPING	ZFIN Curated Data
ci302	5		GRCz11	OTHER_MAPPING	ZFIN Curated Data
hu2124	5		GRCz11	OTHER_MAPPING	ZFIN Curated Data
kt1060	5		GRCz11	OTHER_MAPPING	ZFIN Curated Data
zf2173	5		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
5	250.1 cM	her1	Mother of Pearl (MOP)	Postlethwait, John H.	Data
5	6345.0 cR	her1	Goodfellow T51 (T51)	Geisler, Robert	Data
5	124.3 cM	her1	Heat Shock (HS)	Woods, Ian G.	Data
5	125.83 cM	her1	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	638	Hha I;Msp I	36.0
Forward Primer	CAATCCTCTCAACCACGGAC
Reverse Primer	ACAGCAAAGACCCCAGAACA

Genomic Feature kt1060 is an allele of her1