ZFIN ID: ZDB-GENE-980526-144

Mapping Details

Gene Name:	hairy-related 6
Symbol:	her6

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	6	39,108,800 - 39,110,485	GRCz12tu
NCBI Map Viewer	6	39,108,800 - 39,110,485	GRCz12tu
Ensembl	6	36,551,083 - 36,552,844	GRCz11
NCBI Map Viewer	6	36,551,083 - 36,552,768	GRCz11
UCSC	6	-	GRCz11
Vega	6	36,573,189 - 36,574,950	GRCv10

Mapped Clones containing her6
DKEY-111K7	Chr: 6 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
co3005	6	36,552,295 - 36,552,298	GRCz11	DIRECT	Stenzel et al., 2022
m1358	6	39,109,825 - 39,110,111	GRCz12tu	DIRECT	Sigloch et al., 2023
sa20748	6	39,109,969	GRCz12tu	DIRECT	Sealy et al., 2025
	6	36,552,252	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	6	36,574,358	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	6	36,330,824	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa38559	6	39,110,152	GRCz12tu	DIRECT	Sealy et al., 2025
	6	36,552,435	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	6	36,574,541	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	6	36,331,007	Zv9	DIRECT	Busch-Nentwich et al., 2013
sud29	6	39,110,014 - 39,110,018	GRCz12tu	DIRECT	Tsuruoka et al., 2025
co3005	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data
el633	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data
sa59	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data
umc301Tg	6		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
6	134.1 cM	her6	Mother of Pearl (MOP)	Postlethwait, John H.	Data
6	352.38 cR	HER-6	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
6	74.43 cM	her6	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	419		36.0
Forward Primer	GCAACCGACGGACAGTTCGC
Reverse Primer	AACGTGGAAAGATACCGCAAATA

Genomic Feature co3005 is an allele of her6