ZFIN ID: ZDB-GENE-990630-14

ZFIN ID: ZDB-GENE-990630-14

Mapping Details

Gene Name:	clock circadian regulator a
Symbol:	clocka

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	20	24,616,379 - 24,723,455	GRCz12tu
NCBI Map Viewer	20	24,616,379 - 24,723,455	GRCz12tu
Ensembl	20	22,067,337 - 22,176,003	GRCz11
NCBI Map Viewer	20	22,068,967 - 22,176,005	GRCz11
UCSC	20	-	GRCz11
Vega	20	22,168,487 - 22,170,421	GRCv10
Vega	20	22,167,664 - 22,276,330	GRCv10

Mapped Clones containing clocka
CH211-278F21	Chr: 20 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
ihb741	20	22,154,102 - 22,154,109	GRCz11	DIRECT		Zebrafish Nomenclature Committee
ihb742	20	22,154,110 - 22,154,114	GRCz11	DIRECT		Zebrafish Nomenclature Committee
sa14713	20	24,692,600	GRCz12tu	DIRECT		Sealy et al., 2025
	20	22,145,175	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	22,245,502	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	22,217,335	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa17257	20	24,708,026	GRCz12tu	DIRECT		Sealy et al., 2025
	20	22,160,599	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	22,260,926	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	22,232,759	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa23683	20	24,697,808	GRCz12tu	DIRECT		Sealy et al., 2025
	20	22,150,383	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	22,250,710	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	22,222,543	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa37017	20	24,711,012	GRCz12tu	DIRECT		Sealy et al., 2025
	20	22,163,585	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	22,263,912	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	22,235,745	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa39276	20	24,691,977	GRCz12tu	DIRECT		Sealy et al., 2025
	20	22,144,552	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	22,244,879	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	22,216,712	Zv9	DIRECT		Busch-Nentwich et al., 2013
zf4122	20	22,149,321 - 22,149,325	GRCz11	DIRECT		Chen et al., 2023
dg3	20		GRCz11	OTHER_MAPPING	linkagesDirectMem2
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	20		GRCz11	OTHER_MAPPING	linkagesDirectMem1
ihb741	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
ihb742	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa14713	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa17257	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa23683	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa37017	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa39276	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
zf4122	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z3211	SSLP	20		Tan et al., 2008	Tan et al. (2008. J. Neurogenet. 22(2): 149-166) report mapping the clock gene ...

Chr 20

Tan et al., 2008

Tan et al. (2008. J. Neurogenet. 22(2): 149-166) report mapping the clock gene to LG20 on the T51 ...

Genomic Feature dg3 is an allele of clocka

Marker	Type	Chr	Distance	Publication / Person	Comments
z3211	SSLP	20	1.2 cM	Tan et al., 2008	Tan et al. (2008. J. Neurogenet. 22(2): 149-166) reports mapping dg3 to LG20, ...
z3964	SSLP	20	3.6 cM	Tan et al., 2008	Tan et al. (2008. J. Neurogenet. 22(2): 149-166) reports mapping dg3 to LG20, ...

Genomic Feature ihb742 is an allele of clocka