ZFIN ID: ZDB-GENE-990415-234

Mapping Details

Gene Name:	recombination activating 1
Symbol:	rag1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	25	9,800,090 - 9,809,395	GRCz12tu
NCBI Map Viewer	25	9,800,090 - 9,809,395	GRCz12tu
Ensembl	25	9,003,368 - 9,009,873	GRCz11
NCBI Map Viewer	25	9,003,355 - 9,009,873	GRCz11
UCSC	25	-	GRCz11
Vega	25	8,926,300 - 8,932,805	GRCv10

Mapped Clones containing rag1
CH211-256A21	Chr: 25 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
hu1999	25	9,807,464	GRCz12tu	DIRECT		Sealy et al., 2025
	25	9,007,943	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	25	8,930,875	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	25	9,236,212	Zv9	DIRECT		Busch-Nentwich et al., 2013
ihb754	25	9,005,241 - 9,005,245	GRCz11	DIRECT		Zebrafish Nomenclature Committee
sa32518	25	9,807,444	GRCz12tu	DIRECT		Sealy et al., 2025
	25	9,007,923	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	25	8,930,855	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	25	9,236,192	Zv9	DIRECT		Busch-Nentwich et al., 2013
zf2024	25	9,005,630 - 9,005,642	GRCz11	DIRECT		Shibata et al., 2018
hu1999	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	25		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
ihb479	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	25		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
ihb754	25		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa32518	25		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
t26683	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	25		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
zf2024	25		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	25		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
25	127.94 cR	rag1	Loeb/NIH/5000/4000 (LN54)	Johnson, Stephen L.	Data
25	1129.0 cR	rag1	Goodfellow T51 (T51)	Geisler, Robert	Data
25	19.9 cM	rag1	Heat Shock (HS)	Woods, Ian G.	Data
25	29.3 cM	rag1	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available

Genomic Feature zf2024 is an allele of rag1