ZFIN ID: ZDB-GENE-990715-11

Mapping Details

Gene Name: EBF transcription factor 2
Symbol: ebf2
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 5 73,402,070 - 73,453,787 GRCz12tu
NCBI Map Viewer 5 73,402,070 - 73,453,787 GRCz12tu
Ensembl 5 67,390,645 - 67,439,831 GRCz11
NCBI Map Viewer 5 67,390,600 - 67,439,831 GRCz11
UCSC 5 - GRCz11
Vega 5 66,712,276 - 66,761,462 GRCv10
Mapped Clones containing ebf2
DKEY-251I10 Chr: 5 Details
CH211-110P13 Chr: 5 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa2249 5 73,409,631 GRCz12tu DIRECT Sealy et al., 2025
5 67,398,161 GRCz11 DIRECT Busch-Nentwich et al., 2013
5 66,719,792 GRCz10 DIRECT Busch-Nentwich et al., 2013
5 70,394,648 Zv9 DIRECT Busch-Nentwich et al., 2013
sa20582 5 73,445,923 GRCz12tu DIRECT Sealy et al., 2025
5 67,432,013 GRCz11 DIRECT Busch-Nentwich et al., 2013
5 66,753,644 GRCz10 DIRECT Busch-Nentwich et al., 2013
5 70,428,500 Zv9 DIRECT Busch-Nentwich et al., 2013
sa44626 5 73,446,950 GRCz12tu DIRECT Sealy et al., 2025
5 67,433,040 GRCz11 DIRECT Busch-Nentwich et al., 2013
5 66,754,671 GRCz10 DIRECT Busch-Nentwich et al., 2013
5 70,429,527 Zv9 DIRECT Busch-Nentwich et al., 2013
sa2249 5 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
5 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
5 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
5 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa20582 5 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
5 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
5 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
5 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa44626 5 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
5 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
5 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
5 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
5 333.09 cR coe2 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
5 121.7 cM coe2 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z23067 SSLP 5 Farber et al., 2003 Farber et al. (Genome Res 13, 1082-1096, 2003) mapped the anxa1b gene to LG5  ...
z23067 SSLP 5 Farber et al., 2003 Farber et al (Genome Res 13, 1082-1096, 2003) mapped the anxa1b gene to LG5  ...
z23067 SSLP 5 Farber et al., 2003 Farber et al (Genome Res 13, 1082-1096, 2003) mapped the anxa1c gene to LG5  ...
z23067 SSLP 5 Farber et al., 2003 Farber et al (Genome Res 13, 1082-1096, 2003) mapped the anxa1c gene to LG5  ...
anxa1b GENE 5 Farber et al., 2003 Farber et al (Genome Res 13, 1082-1096, 2003) mapped the anxa1b gene to LG5  ...
anxa1c GENE 5 Farber et al., 2003 Farber et al (Genome Res 13, 1082-1096, 2003) mapped the anxa1c gene to LG5  ...
anxa1b GENE 5 Farber et al., 2003 Farber et al. (Genome Res 13, 1082-1096, 2003) mapped the anxa1b gene to LG5  ...
anxa1c GENE 5 Farber et al., 2003 Farber et al (Genome Res 13, 1082-1096, 2003) mapped the anxa1c gene to LG5  ...
sebox GENE 5 0.4 cR Poulain et al., 2002 Poulain and Lepage (2002. Dev 129:4901-4914.) report mapping og9x 0.4 cR away from coe2 on linkage group 5 on the LN54 mapping panel.

OTHER MAPPING INFORMATION
Chr 5 Farber et al., 2003 Farber et al. (Genome Res 13, 1082-1096, 2003) mapped the anxa1b gene to LG5 between Z23067 and  ...
Chr 5 Farber et al., 2003 Farber et al (Genome Res 13, 1082-1096, 2003) mapped the anxa1b gene to LG5 between Z23067 and coe2  ...
Chr 5 Farber et al., 2003 Farber et al (Genome Res 13, 1082-1096, 2003) mapped the anxa1c gene to LG5 between Z23067 and coe2  ...
Chr 5 Farber et al., 2003 Farber et al (Genome Res 13, 1082-1096, 2003) mapped the anxa1c gene to LG5 between Z23067 and coe2  ...
Genomic Feature sa44626 is an allele of ebf2