ZFIN ID: ZDB-GENE-990714-27

Mapping Details

Gene Name:	paired-like homeodomain 2
Symbol:	pitx2

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	14	40,836,464 - 40,847,539	GRCz12tu
NCBI Map Viewer	14	40,836,464 - 40,847,539	GRCz12tu
Ensembl	14	36,220,479 - 36,229,828	GRCz11
NCBI Map Viewer	14	36,220,499 - 36,229,825	GRCz11
UCSC	14	-	GRCz11
Vega	14	35,880,165 - 35,889,514	GRCv10

Mapped Clones containing pitx2
DKEYP-96B6	Chr: 14 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
gyf102	14	40,845,337	GRCz12tu	DIRECT	Zheng et al., 2025
mw709	14	36,227,642 - 36,227,649	GRCz11	DIRECT	Hendee et al., 2018
sa250	14	40,845,262	GRCz12tu	DIRECT	Sealy et al., 2025
	14	36,227,519	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	14	35,887,205	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	14	37,447,878	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa22522	14	40,845,240	GRCz12tu	DIRECT	Sealy et al., 2025
	14	36,227,497	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	14	35,887,183	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	14	37,447,856	Zv9	DIRECT	Busch-Nentwich et al., 2013
sny3	14	36,226,621 - 36,226,631	GRCz11	DIRECT	Ji et al., 2016
sny6	14	36,227,642 - 36,227,647	GRCz11	DIRECT	Ji et al., 2016
sny7	14	36,227,642 - 36,227,649	GRCz11	DIRECT	Ji et al., 2016
sny15	14	36,227,643 - 36,227,650	GRCz11	DIRECT	Ji et al., 2016
ups6	14	36,226,757 - 36,226,762	GRCz11	DIRECT	Collins et al., 2018
zsc2	14	36,228,619	GRCz11	DIRECT	Zhang et al., 2024
mw709	14		GRCz11	OTHER_MAPPING	ZFIN Curated Data
sny3	14		GRCz11	OTHER_MAPPING	ZFIN Curated Data
sny6	14		GRCz11	OTHER_MAPPING	ZFIN Curated Data
sny7	14		GRCz11	OTHER_MAPPING	ZFIN Curated Data
sny15	14		GRCz11	OTHER_MAPPING	ZFIN Curated Data
ups6	14		GRCz11	OTHER_MAPPING	ZFIN Curated Data
zsc2	14		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
20	111.37 cR	pitx2a	Loeb/NIH/5000/4000 (LN54)	Johnson, Stephen L.	Data
14	91.9 cM	pitx2a	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available

Genomic Feature ups6 is an allele of pitx2