ZFIN ID: ZDB-GENE-020531-2

Mapping Details

Gene Name: aryl hydrocarbon receptor 1a
Symbol: ahr1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 16 21,357,288 - 21,462,948 GRCz12tu
NCBI Map Viewer 16 21,357,288 - 21,462,948 GRCz12tu
Ensembl 16 20,013,827 - 20,038,263 GRCz11
NCBI Map Viewer 16 20,009,154 - 20,038,263 GRCz11
UCSC 16 - GRCz11
Vega 16 20,208,008 - 20,232,444 GRCv10
Mapped Clones containing ahr1a
DKEY-242C17 Chr: 16 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source Citations
mu152 16 20,037,454 - 20,037,459 GRCz11 DIRECT Sugden et al., 2017
mu153 16 20,037,455 - 20,037,468 GRCz11 DIRECT Sugden et al., 2017
mu154 16 20,037,454 - 20,037,470 GRCz11 DIRECT Sugden et al., 2017
sa1410 16 21,372,138 GRCz12tu DIRECT Sealy et al., 2025
16 20,024,004 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 20,218,185 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 22,111,742 Zv9 DIRECT Busch-Nentwich et al., 2013
sa16655 16 21,365,765 GRCz12tu DIRECT Sealy et al., 2025
16 20,017,631 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 20,211,812 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 22,105,369 Zv9 DIRECT Busch-Nentwich et al., 2013
sa28637 16 21,367,942 GRCz12tu DIRECT Sealy et al., 2025
16 20,019,808 GRCz11 DIRECT Busch-Nentwich et al., 2013
16 20,213,989 GRCz10 DIRECT Busch-Nentwich et al., 2013
16 22,107,546 Zv9 DIRECT Busch-Nentwich et al., 2013
uab139 16 20,014,909 - 20,014,913 GRCz11 DIRECT Souder et al., 2019
mu152 16 GRCz11 OTHER_MAPPING ZFIN Curated Data
mu153 16 GRCz11 OTHER_MAPPING ZFIN Curated Data
mu154 16 GRCz11 OTHER_MAPPING ZFIN Curated Data
uab139 16 GRCz11 OTHER_MAPPING ZFIN Curated Data

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z3104 SSLP 16 29.44 cR Hahn, 2005 mapped on the LN54 panel with PCR vectors as indicated:

ahr1a (maps to LG16) 000001010000000000000000000010000001001011011110001100010000001000111110000000010000011001101
ahr1a Linkage group 16, 29.44 cR from Z3104
The best overall marker (in linkage group 16) is linked to the query marker with a LOD of 12.0
The best marker in the second-best linkage group (linkage group 19) is linked to the query marker with a LOD of 3.2

OTHER MAPPING INFORMATION
Chr 16 Andreasen et al., 2002 Andreasen et al. (2002) mapped ahr1 to LG 16 using the LN54 Radiation Hybrid panel.
Genomic Feature mu152 is an allele of ahr1a
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