Genomic Feature
mu153
- ID
- ZDB-ALT-171017-3
- Name
- mu153
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Siekmann Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 16: 20037455 - 20037468 (GRCz11) (1) Details
- Nucleotide change
- ATCTCCCTGGCCAA/-
- Variant Notes
-
stop codon is in the bHLH domain
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 14 bp deleted in Exon 2 (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
CAATGAGTTCACTGTACTCAAATGCCCTCCACGAGCATTAGTAGACTGTCTGCTTAATATCTGTTGATACTGTTCCTTCAACAGACATTTAACTCACCATAAGACACTTTACAAGTACAAGTCAACTTACACTAACCCTAACTTAATAGTCTAATTATATTCTAATGAGAATTAGTTGGCATGTACAACAAACAGACCATCAAAATAAAGTGTGACCCTAAAAGCTACTACAGTACATAATAATTACCACAAATACATTATAATTCAGGTATTGTCACCTTCCACAATAATAAATGGACTCCTAATCTTTCATATTTTAATAATCTGCATGAGAGATTAATGCATAACCAATTTAATAGTCAGAAATTAAGCAACAATGACACATAACTGCAGAATTTTTTTCATTACTTTTGAAGTGACTTTTGGCCCGCAAGTAGCTCACACTTAGCCTCAGTATGGTGAGTTTGTCCAGCGTGGATACGATCTCCTGTGGAAAAGGA
ATCTCCCTGGCCAA/- GCTGGCCAGAACTTCATTCATACGGTCTCTATGTCGTTTGGAGGGATTGGATTTAACACATGTAAGAGGCTGCTTCACACTAACATAAAAAGAGAGAGAAAAAAAACATAACATTACTTTTTTAGAACAATTGGGAATTTCTCATAGGAACATTTGCTTTAGAACTTCAAAAAAGACATTTTTAAATCAATCTGTCATACTGTACTCTTTCAGCCCTCACACCATGTATTCTCAAATGTTTGTCTACATACTAAACAATTGCATTCTGGTCAGTGGTAATCACTCAACGTTTTAGAATAGATTTAGACATCGCCCACTGCAATTTAGTAAATAGATGGTAAAACATCAATATAAAACTAACACTAATATAAAATAAAAACTATTACCTTTTCTGGACAGGTTTCCTCCTTTTGCGACTTGCATAAATATTACTGGAGCTCATAATCTCCAAAGAAACAGATTCGTGGTTTGTGAGTGTTTTTTTCAGTGCTAGGCTAGCA - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
ahr1amu153/mu153 | Homozygous | Unknown | Fig. 3 ![]() | 3 figures ![]() | |
ahr1amu153/mu153; s843Tg | Complex | Fig. 3 ![]() | Fig. 3 ![]() | ||
ahr2hu3335/hu3335; ahr1amu153/mu153; ahr1bmu145/mu145 | Complex | Fig. 3 ![]() | 4 figures ![]() | ||
ahr2hu3335/hu3335; ahr1amu153/mu153; ahr1bmu145/mu145; s843Tg | Complex | Fig. 3 ![]() | Fig. 3 ![]() |
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Supplemental Information
- Genotyping protocol
- None
- Souder, J.P., Gorelick, D.A. (2019) ahr2, but not ahr1a or ahr1b, is required for craniofacial and fin development and TCDD-dependent cardiotoxicity in zebrafish. Toxicological sciences : an official journal of the Society of Toxicology. 170(1):25-44
- Sugden, W.W., Leonardo-Mendonça, R.C., Acuña-Castroviejo, D., Siekmann, A.F. (2017) Genetic dissection of endothelial transcriptional activity of zebrafish aryl hydrocarbon receptors (AHRs). PLoS One. 12:e0183433
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