ZFIN ID: ZDB-GENE-990714-27

Mapping Details

Gene Name: paired-like homeodomain 2
Symbol: pitx2
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 14 40,836,464 - 40,847,539 GRCz12tu
NCBI Map Viewer 14 40,836,464 - 40,847,539 GRCz12tu
Ensembl 14 36,220,479 - 36,229,828 GRCz11
NCBI Map Viewer 14 36,220,499 - 36,229,825 GRCz11
UCSC 14 - GRCz11
Vega 14 35,880,165 - 35,889,514 GRCv10
Mapped Clones containing pitx2
DKEYP-96B6 Chr: 14 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
mw709 14 36,227,642 - 36,227,649 GRCz11 DIRECT Hendee et al., 2018
sa250 14 40,845,262 GRCz12tu DIRECT Sealy et al., 2025
14 36,227,519 GRCz11 DIRECT Busch-Nentwich et al., 2013
14 35,887,205 GRCz10 DIRECT Busch-Nentwich et al., 2013
14 37,447,878 Zv9 DIRECT Busch-Nentwich et al., 2013
sa22522 14 40,845,240 GRCz12tu DIRECT Sealy et al., 2025
14 36,227,497 GRCz11 DIRECT Busch-Nentwich et al., 2013
14 35,887,183 GRCz10 DIRECT Busch-Nentwich et al., 2013
14 37,447,856 Zv9 DIRECT Busch-Nentwich et al., 2013
sny3 14 36,226,621 - 36,226,631 GRCz11 DIRECT Ji et al., 2016
sny6 14 36,227,642 - 36,227,647 GRCz11 DIRECT Ji et al., 2016
sny7 14 36,227,642 - 36,227,649 GRCz11 DIRECT Ji et al., 2016
sny15 14 36,227,643 - 36,227,650 GRCz11 DIRECT Ji et al., 2016
ups6 14 36,226,757 - 36,226,762 GRCz11 DIRECT Collins et al., 2018
zsc2 14 36,228,619 GRCz11 DIRECT Zhang et al., 2024
mw709 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
20 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa250 14 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
20 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa22522 20 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
14 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sny3 14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
20 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
14 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sny6 14 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
20 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sny7 14 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
20 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sny15 20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
20 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
ups6 14 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
20 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
zsc2 14 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
14 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
20 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
20 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
20 111.37 cR pitx2a Loeb/NIH/5000/4000 (LN54) Johnson, Stephen L. Data
14 91.9 cM pitx2a Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available
Genomic Feature sny15 is an allele of pitx2
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