ZFIN ID: ZDB-GENE-020419-32

Mapping Details

Gene Name: histone deacetylase 1
Symbol: hdac1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN Gbrowse 19 29,808,699 - 29,818,648 GRCz11
Ensembl 19 29,808,699 - 29,818,648 GRCz11
Vega 19 30,221,386 - 30,231,336 GRCv10
NCBI Map Viewer 19 29,808,645 - 29,818,648 GRCz11
UCSC 19 - GRCv10
Mapped Clones containing hdac1
CH73-130A3 Chr: 19 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
b382 19 29,812,782 GRCz11 Nambiar et al., 2007
hi1618Tg 19 29,808,789 - 29,808,790 GRCz11 ZFIN Curated Data
hi2628Tg 19 29,809,450 - 29,809,451 GRCz11 ZFIN Curated Data
is70 19 29,812,836 - 29,812,839 GRCz11 Schultz et al., 2018
s436 19 29,814,011 GRCz11 Noël et al., 2008
sa3005 19 29,811,133 GRCz11 Busch-Nentwich et al., 2013
19 30,223,820 GRCz10 Busch-Nentwich et al., 2013
19 31,056,531 Zv9 Busch-Nentwich et al., 2013
la013452Tg 19 31,054,898 - 31,054,908 Zv9

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
19 79.4 cM hdac1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
csnk2b GENE 19 Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...
z9059 SSLP 19 Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...
z22532 SSLP 19 Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...
hey1 GENE 19 Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...
b382 Feature 19 Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...

OTHER MAPPING INFORMATION
Chr 19 Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and 1.6 cM north of  ...
Markers Encoded by hdac1
chunp6919 Chr: 19 Details
fb19h11 Chr: 19 Details
Genomic Feature rw399 is an allele of hdac1
Marker Type Chr Distance Publication / Person Comments
z11872 SSLP 19 Yamaguchi et al., 2005 Yamaguchi et al. (2005, Development 32(13):3027-3043) Mapped hdac1rw399 between z11872 and z7235.
z7235 SSLP 19 Yamaguchi et al., 2005 Yamaguchi et al. (2005, Development 32(13):3027-3043) Mapped hdac1rw399 between z11872 and z7235.
Genomic Feature t24411 is an allele of hdac1
Marker Type Chr Distance Publication / Person Comments
z11872 SSLP 19 1.0 cM Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
z15237 SSLP 19 1.5 cM Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
t23715 Feature 19 Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
t22925 Feature 19 Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
z7235 SSLP 19 Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
Genomic Feature t23715 is an allele of hdac1
Marker Type Chr Distance Publication / Person Comments
z11872 SSLP 19 1.0 cM Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
z15237 SSLP 19 1.5 cM Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
t22925 Feature 19 Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
z7235 SSLP 19 Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
t24411 Feature 19 Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
Genomic Feature t22925 is an allele of hdac1
Marker Type Chr Distance Publication / Person Comments
z11872 SSLP 19 1.0 cM Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
z15237 SSLP 19 1.5 cM Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
z7235 SSLP 19 Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
t24411 Feature 19 Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
t23715 Feature 19 Stadler et al., 2005 Stadler et al. (2005, Dev. Dyn. 233(3):883-889) have mapped several alleles of hdac1 to chromosome 19 on the MGH panel.
Genomic Feature b382 is an allele of hdac1
Marker Type Chr Distance Publication / Person Comments
z9059 SSLP 19 0.6 cM Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...
z22532 SSLP 19 1.6 cM Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...
hey1 GENE 19 Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...
hdac1 GENE 19 Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...
csnk2b GENE 19 Nambiar et al., 2007 b382 was mapped to LG19 0.6cM south of Z9059 (6 recombinants out of 1004) and  ...
Genomic Feature b382 is an allele of hdac1
Chr 19 Nambiar et al., 2004 Nambiar and Henion (2004, Dev. Biol. 267(1):165-80) mapped col b382 to LG19 using SSLP on a  ...
Genomic Feature rw399 is an allele of hdac1
Chr 19 Yamaguchi et al., 2005 Yamaguchi et al. (2005, Development 32(13):3027-3043) Mapped hdac1rw399 between  ...
Genomic Feature sa3005 is an allele of hdac1