ZFIN ID: ZDB-GENE-980526-347

Mapping Details

Gene Name:	LIM homeobox 1a
Symbol:	lhx1a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	15	30,195,711 - 30,270,713	GRCz12tu
NCBI Map Viewer	15	30,195,711 - 30,270,713	GRCz12tu
Ensembl	15	27,703,409 - 27,710,575	GRCz11
NCBI Map Viewer	15	27,703,060 - 27,711,021	GRCz11
UCSC	15	-	GRCz11
Vega	15	27,770,533 - 27,777,699	GRCv10

Mapped Clones containing lhx1a
CH211-190N9	Chr: 15 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
nub93	15	27,710,293 - 27,710,302	GRCz11	DIRECT	Itoh et al., 2024
sa15189	15	30,203,010	GRCz12tu	DIRECT	Sealy et al., 2025
	15	27,710,266	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	15	27,777,390	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	15	27,059,150	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa15800	15	30,201,431	GRCz12tu	DIRECT	Sealy et al., 2025
	15	27,708,689	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	15	27,775,813	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	15	27,057,573	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa39051	15	30,200,743	GRCz12tu	DIRECT	Sealy et al., 2025
	15	27,708,001	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	15	27,775,125	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	15	27,056,885	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa42561	15	30,202,902	GRCz12tu	DIRECT	Sealy et al., 2025
	15	27,710,158	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	15	27,777,282	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	15	27,059,042	Zv9	DIRECT	Busch-Nentwich et al., 2013
ihb25	15		GRCz11	OTHER_MAPPING	ZFIN Curated Data
nub93	15		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
15	91.2 cM	lim1	Mother of Pearl (MOP)	Postlethwait, John H.	Data
15	210.53 cR	lim1	Loeb/NIH/5000/4000 (LN54)	Johnson, Stephen L.	Data
15	71.2 cM	lim1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Markers Encoded by lhx1a
fe25d04 Chr: 15 Details

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	1330	MspI	36.0
Forward Primer	GTGGACAGACTCGAGCC
Reverse Primer	GACTAGGCGAGTCTCC

Genomic Feature ihb25 is an allele of lhx1a