ZFIN ID: ZDB-GENE-980526-347
Gene Name: LIM homeobox 1a
Gene Symbol: lhx1a
Sequence Ontology ID : SO:0000704

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Previous Names: lim1, lim1a (1), wu:fe25d04, wu:fj36b06

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 43 figures from 30 publications
Directly Submitted Expression Data: 6 figures (18 images) from Thisse et al., 2005 [eu502]
Wild-type Stages, Structures: Blastula:30%-epiboly (4.66h-5.25h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb25 Indel Unknown Unknown TALEN
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • sa15189 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15800 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39051 Point Mutation Unknown Premature Stop ENU
    sa42561 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lhx1a HUMAN ORTHOLOG No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cerebellar Purkinje cell differentiation (more)
    Cellular Component nucleus (more)
    Molecular Function DNA-binding transcription factor activity (more)
    GO Terms (all 39)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001781 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00478 (1)
  • PROSITE:PS50023 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF00412 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lhx1a-001 (1) 2402
    lhx1a-002 (1) 433
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM lhx1a
    MARKER RELATIONSHIPS
    lhx1aContained in: [BAC] CH211-190N9 (1) (order this)
    lhx1aEncodes: [EST] eu502 (1), fe25d04, fj36b06
    [cDNA] MGC:194055 (1) (order this), MGC:194076 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131216 (1) 2243bp
    Genomic GenBank:AL935164 (1) 170509bp
    Select Tool
    Polypeptide UniProtKB:B3DGH2 (1) 405aa
    Sequence Clusters UniGene:364 (1)
    Sequence Information (all 26)
    OTHER lhx1a GENE PAGES
  • Alliance (1)
  • Gene:30463 (1)
  • VEGA:OTTDARG00000028006 (1)
  • Ensembl(GRCz11):ENSDARG00000014018 (1)
  • ORTHOLOGY for lhx1a (Chr: 15)
    CITATIONS (84)