ZFIN ID: ZDB-GENE-980526-347
Gene Name: LIM homeobox 1a
Gene Symbol: lhx1a
Sequence Ontology ID : SO:0000704

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Previous Names: lim1, lim1a (1), wu:fe25d04, wu:fj36b06

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 43 figures from 30 publications
Directly Submitted Expression Data: 6 figures (18 images) from Thisse et al., 2005 [eu502]
Wild-type Stages, Structures: Blastula:30%-epiboly (4.66h-5.25h) to Adult (90d-730d, breeding adult)
  axial mesoderm, axis, brain, CiA (all 39) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb25 Indel Unknown Unknown TALEN
  • China Zebrafish Resource Center (CZRC) (order this)
  • sa15189 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15800 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa39051 Point Mutation Unknown Premature Stop ENU
    sa42561 Point Mutation Unknown Splice Site ENU
    Targeting reagents: MO1-lhx1a (1), MO2-lhx1a (1)
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lhx1a HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process S-shaped body morphogenesis (more)
    Cellular Component nucleus (more)
    Molecular Function transcription corepressor activity (more)
    GO Terms (all 38)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001781 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00478 (1)
  • PROSITE:PS50023 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF00412 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lhx1a-001 (1) 2402
    lhx1a-002 (1) 433
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM lhx1a
    Tg(lhx1a:EGFP)
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    lhx1aContained in: [BAC] CH211-190N9 (1) (order this)
    lhx1aEncodes: [EST] eu502 (1), fe25d04, fj36b06
    [cDNA] MGC:194055 (1) (order this), MGC:194076 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131216 (1) 2243bp
    Genomic GenBank:AL935164 (1) 170509bp
    Select Tool
    Polypeptide UniProtKB:B3DGH2 (1) 405aa
    Sequence Clusters UniGene:364 (1)
    Sequence Information (all 25)
    OTHER lhx1a GENE PAGES
  • Gene:30463 (1)
  • VEGA:OTTDARG00000028006 (1)
  • Ensembl(GRCz10):ENSDARG00000014018 (1)
  • ORTHOLOGY for lhx1a (Chr: 15)
    CITATIONS (77)