ZFIN ID: ZDB-GENE-980526-347

Mapping Details

Gene Name: LIM homeobox 1a
Symbol: lhx1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 15 30,195,711 - 30,270,713 GRCz12tu
NCBI Map Viewer 15 30,195,711 - 30,270,713 GRCz12tu
Ensembl 15 27,703,409 - 27,710,575 GRCz11
NCBI Map Viewer 15 27,703,060 - 27,711,021 GRCz11
UCSC 15 - GRCz11
Vega 15 27,770,533 - 27,777,699 GRCv10
Mapped Clones containing lhx1a
CH211-190N9 Chr: 15 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
nub93 15 27,710,293 - 27,710,302 GRCz11 DIRECT Itoh et al., 2024
sa15189 15 30,203,010 GRCz12tu DIRECT Sealy et al., 2025
15 27,710,266 GRCz11 DIRECT Busch-Nentwich et al., 2013
15 27,777,390 GRCz10 DIRECT Busch-Nentwich et al., 2013
15 27,059,150 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15800 15 30,201,431 GRCz12tu DIRECT Sealy et al., 2025
15 27,708,689 GRCz11 DIRECT Busch-Nentwich et al., 2013
15 27,775,813 GRCz10 DIRECT Busch-Nentwich et al., 2013
15 27,057,573 Zv9 DIRECT Busch-Nentwich et al., 2013
sa39051 15 30,200,743 GRCz12tu DIRECT Sealy et al., 2025
15 27,708,001 GRCz11 DIRECT Busch-Nentwich et al., 2013
15 27,775,125 GRCz10 DIRECT Busch-Nentwich et al., 2013
15 27,056,885 Zv9 DIRECT Busch-Nentwich et al., 2013
sa42561 15 30,202,902 GRCz12tu DIRECT Sealy et al., 2025
15 27,710,158 GRCz11 DIRECT Busch-Nentwich et al., 2013
15 27,777,282 GRCz10 DIRECT Busch-Nentwich et al., 2013
15 27,059,042 Zv9 DIRECT Busch-Nentwich et al., 2013
ihb25 15 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
nub93 15 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa15189 15 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa15800 15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
15 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa39051 15 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa42561 15 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
15 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
15 91.2 cM lim1 Mother of Pearl (MOP) Postlethwait, John H. Data
15 210.53 cR lim1 Loeb/NIH/5000/4000 (LN54) Johnson, Stephen L. Data
15 71.2 cM lim1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION
Markers Encoded by lhx1a
fe25d04 Chr: 15 Details
Primer Sets:
Strain Bandsize Restriction Enzyme Annealing Temperature [C]
SJD 1330 MspI 36.0
Forward Primer GTGGACAGACTCGAGCC
Reverse Primer GACTAGGCGAGTCTCC
Genomic Feature sa15189 is an allele of lhx1a
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.