ZFIN ID: ZDB-GENE-021206-1

ZFIN ID: ZDB-GENE-021206-1

Mapping Details

Gene Name:	heat shock 60 protein 1
Symbol:	hspd1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	9	33,966,692 - 33,980,858	GRCz12tu
NCBI Map Viewer	9	33,966,692 - 33,980,858	GRCz12tu
Ensembl	9	32,286,605 - 32,300,783	GRCz11
NCBI Map Viewer	9	32,286,605 - 32,300,716	GRCz11
UCSC	9	-	GRCz11
Vega	9	32,475,859 - 32,490,037	GRCv10

Mapped Clones containing hspd1
DKEY-83M22	Chr: 9 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa11157	9	33,980,675	GRCz12tu	DIRECT		Sealy et al., 2025
	9	32,300,533	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	9	32,489,787	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	9	33,333,841	Zv9	DIRECT		Busch-Nentwich et al., 2013
zp7	9	32,290,967	GRCz11	DIRECT		ZFIN Curated Data
la026911Tg	9	33,333,943 - 33,333,953	Zv9	ZFIN_Zv9	BurgessLin
zp7	9		GRCz11	GENERAL_LOAD	load data [singleton]
la026911Tg	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	9		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sa11157	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	9		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
zp7	9		GRCz11	OTHER_MAPPING	linkagesDirectMem2
	9		GRCz11	OTHER_MAPPING	linkagesDirectMem1
	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	9		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
9	458.05 cR	IBD2197	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
hspe1	GENE	unknown		Martin et al., 2002	Martin, et al. (2002. Genome 45:804-811.) report isolating a single PAC containing the hspd1 and hspe1 genes. The authors use restriction digest analysis and Southern blot analysis to subclone and isolate the region in a plasmid vector. Sequencing the plasmid demonstrates that the two genes are 860bp apart in a head-to-head orientation.

Chr unknown

Martin, et al. (2002. Genome 45:804-811.) report isolating a single PAC containing the hspd1 ...

Markers Encoded by hspd1
fa04a05 Chr: 9 Details
ibd2197 Chr: 9 Details

Genomic Feature zp7 is an allele of hspd1

Marker	Type	Chr	Distance	Publication / Person	Comments
z50394	SSLP	9		Makino et al., 2005	Makino, et al. (2005. PNAS 102:14599-14604) reports mapping zp7 to LG9 between z54324 and z50394.
z54324	SSLP	9		Makino et al., 2005	Makino, et al. (2005. PNAS 102:14599-14604) reports mapping zp7 to LG9 between z54324 and z50394.

Genomic Feature zp7 is an allele of hspd1

Chr 9

Makino, et al. (2005. PNAS 102:14599-14604) reports mapping zp7 to LG9 between z54324 and ...

Genomic Feature la026911Tg is an allele of hspd1