ZFIN ID: ZDB-GENE-020712-1

Mapping Details

Gene Name: protein associated with LIN7 1, MAGUK p55 family member a
Symbol: pals1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 17 35,895,624 - 35,951,329 GRCz12tu
NCBI Map Viewer 17 35,895,624 - 35,951,329 GRCz12tu
Ensembl 17 34,206,167 - 34,239,514 GRCz11
NCBI Map Viewer 17 34,186,632 - 34,242,334 GRCz11
UCSC 17 - GRCz11
Vega 17 34,258,221 - 34,291,568 GRCv10
Mapped Clones containing pals1a
CH211-37L23 Chr: 17 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
m520 17 34,234,220 GRCz11 DIRECT ZFIN Curated Data
sa2908 17 35,940,507 GRCz12tu DIRECT Sealy et al., 2025
17 34,231,513 GRCz11 DIRECT Busch-Nentwich et al., 2013
17 34,283,567 GRCz10 DIRECT Busch-Nentwich et al., 2013
17 34,398,643 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15209 17 35,940,186 GRCz12tu DIRECT Sealy et al., 2025
17 34,231,192 GRCz11 DIRECT Busch-Nentwich et al., 2013
17 34,283,246 GRCz10 DIRECT Busch-Nentwich et al., 2013
17 34,398,322 Zv9 DIRECT Busch-Nentwich et al., 2013
sa36468 17 35,947,787 GRCz12tu DIRECT Sealy et al., 2025
17 34,238,792 GRCz11 DIRECT Busch-Nentwich et al., 2013
17 34,290,846 GRCz10 DIRECT Busch-Nentwich et al., 2013
17 34,405,922 Zv9 DIRECT Busch-Nentwich et al., 2013
zju203 17 34,216,069 - 34,216,073 GRCz11 DIRECT Hao et al., 2020
hi2226Tg 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
m227 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
m520 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
rw161 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
rw464 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
s305 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa2908 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa15209 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa36468 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
wi83Tg 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
zju203 17 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z11341 SSLP 17 0.12 cM Wei et al., 2002 Wei and Malicki (2002. Nat Genet 31:150-157.) report mapping nok to LG17 between z11341 and z4332 using half-tetrad analysis and a high resolution F2 mapping panel. A chromosome walk using BAC and PAC clones identified a 55kb region containing nok and was then sequenced. nok is approximately 0.12cM from z11431 and 1.2cM from z4332.
z4332 SSLP 17 1.2 cM Wei et al., 2002 Wei and Malicki (2002. Nat Genet 31:150-157.) report mapping nok to LG17 between z11341 and z4332 using half-tetrad analysis and a high resolution F2 mapping panel. A chromosome walk using BAC and PAC clones identified a 55kb region containing nok and was then sequenced. nok is approximately 0.12cM from z11431 and 1.2cM from z4332.

OTHER MAPPING INFORMATION: No data available
Genomic Feature rw464 is an allele of pals1a