ZFIN ID: ZDB-GENE-980526-143

Mapping Details

Gene Name: forkhead box D3
Symbol: foxd3
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 6 34,609,219 - 34,611,017 GRCz12tu
NCBI Map Viewer 6 34,609,219 - 34,611,017 GRCz12tu
Ensembl 6 32,092,032 - 32,093,830 GRCz11
NCBI Map Viewer 6 32,092,032 - 32,093,830 GRCz11
UCSC 6 - GRCz11
Vega 6 32,105,118 - 32,106,916 GRCv10
Mapped Clones containing foxd3
DKEY-148H10 Chr: 6 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
ihb666 24 32,164,746 - 32,164,798 GRCz11 DIRECT Zebrafish Nomenclature Committee
ihb667 6 32,164,794 - 32,164,862 GRCz11 DIRECT Zebrafish Nomenclature Committee
sa20726 6 34,610,664 GRCz12tu DIRECT Sealy et al., 2025
6 32,093,477 GRCz11 DIRECT Busch-Nentwich et al., 2013
6 32,106,563 GRCz10 DIRECT Busch-Nentwich et al., 2013
6 31,785,647 Zv9 DIRECT Busch-Nentwich et al., 2013
zdf10 6 32,093,063 GRCz11 DIRECT ZFIN Curated Data
m188 6 GRCz11 GENERAL_LOAD load data [singleton]
zdf10 6 GRCz11 GENERAL_LOAD load data [singleton]
ct110aGt 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
ct110aRGt 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
ihb666 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
ihb667 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
m188 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING linkagesDirectMem2
6 GRCz11 OTHER_MAPPING linkagesDirectMem1
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa174 6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa20726 6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
zdf10 6 GRCz11 OTHER_MAPPING linkagesDirectMem2
6 GRCz11 OTHER_MAPPING linkagesDirectMem1
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
6 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
6 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
6 115.7 cM fkd6 Mother of Pearl (MOP) Postlethwait, John H. Data
6 3520.0 cR fkd6 Goodfellow T51 (T51) Geisler, Robert Data
6 87.5 cM foxd3 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z15259 SSLP 6 Montero-Balaguer et al., 2006 Montero-Balaguer, et al. (2006. Dev. Dyn. 235:3199-3212) reports mapping m188 to the foxd3 gene, between SSLPs Z15259 and Z10183, and near STS BO3194R/F.
z10183 SSLP 6 Montero-Balaguer et al., 2006 Montero-Balaguer, et al. (2006. Dev. Dyn. 235:3199-3212) reports mapping m188 to the foxd3 gene, between SSLPs Z15259 and Z10183, and near STS BO3194R/F.
m188 Feature 6 Montero-Balaguer et al., 2006 Montero-Balaguer, et al. (2006. Dev. Dyn. 235:3199-3212) reports mapping m188 to the foxd3 gene, between SSLPs Z15259 and Z10183, and near STS BO3194R/F.

OTHER MAPPING INFORMATION
Genomic Feature zdf10 is an allele of foxd3
Chr 6 Stewart et al., 2006 Genetic linkage analysis of the zdf10 phenotype to 239 microsatellite markers revealed that markers  ...
Genomic Feature zdf10 is an allele of foxd3
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