ZFIN ID: ZDB-GENE-990415-238

Mapping Details

Gene Name: retinal homeobox gene 3
Symbol: rx3
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 21 12,121,338 - 12,124,296 GRCz12tu
NCBI Map Viewer 21 12,121,338 - 12,124,296 GRCz12tu
Ensembl 21 10,756,154 - 10,759,223 GRCz11
NCBI Map Viewer 21 10,756,265 - 10,759,223 GRCz11
UCSC 21 - GRCz11
Vega 21 10,663,526 - 10,666,595 GRCv10
Mapped Clones containing rx3
CH211-233A1 Chr: 21 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
s399 21 10,757,057 GRCz11 DIRECT Loosli et al., 2003
sa29528 21 12,122,195 GRCz12tu DIRECT Sealy et al., 2025
21 10,757,122 GRCz11 DIRECT Busch-Nentwich et al., 2013
21 10,664,494 GRCz10 DIRECT Busch-Nentwich et al., 2013
21 9,292,441 Zv9 DIRECT Busch-Nentwich et al., 2013
t25181 21 10,757,004 GRCz11 DIRECT Rojas-Munoz et al., 2005
t25327 21 10,758,387 GRCz11 DIRECT Rojas-Munoz et al., 2005
w29 21 10,757,057 GRCz11 DIRECT ZFIN Curated Data
s399 21 GRCz11 GENERAL_LOAD load data [singleton]
w29 21 GRCz11 GENERAL_LOAD load data [singleton]
hu499 21 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
ne2611 21 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
rx3_unspecified 21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
21 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
s399 21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
21 GRCz11 OTHER_MAPPING linkagesDirectMem2
21 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
21 GRCz11 OTHER_MAPPING linkagesDirectMem1
sa29528 21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
21 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
t25181 21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
21 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
t25327 21 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
w29 21 GRCz11 OTHER_MAPPING linkagesDirectMem2
21 GRCz11 OTHER_MAPPING linkagesDirectMem1
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
21 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
21 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
21 50.9 cM rx3 Mother of Pearl (MOP) Postlethwait, John H. Data
21 42.7 cM rx3 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z12068 SSLP 21 Rojas-Munoz et al., 2005 rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068  ...
z17336 SSLP 21 Rojas-Munoz et al., 2005 rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068  ...

OTHER MAPPING INFORMATION
Chr 21 Rojas-Munoz et al., 2005 rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068 (5/48 recombinants).
Genomic Feature s399 is an allele of rx3
Marker Type Chr Distance Publication / Person Comments
z10432 SSLP 21 Loosli et al., 2003
Genomic Feature w29 is an allele of rx3
Marker Type Chr Distance Publication / Person Comments
z10432 SSLP 21 Kennedy et al., 2004 Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to rx3 using SSLPs.
z7925 SSLP 21 Kennedy et al., 2004 Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to rx3 using SSLPs.
Genomic Feature w29 is an allele of rx3
Chr 21 Kennedy et al., 2004 Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to  ...
Genomic Feature s399 is an allele of rx3
Chr 21 Loosli et al., 2003
Genomic Feature rx3_unspecified is an allele of rx3
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