ZFIN Mapping: hu499

ZFIN ID: ZDB-GENE-990415-238

Gene Name:	retinal homeobox gene 3
Symbol:	rx3

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	21	12,121,338 - 12,124,296	GRCz12tu
NCBI Map Viewer	21	12,121,338 - 12,124,296	GRCz12tu
Ensembl	21	10,756,154 - 10,759,223	GRCz11
NCBI Map Viewer	21	10,756,265 - 10,759,223	GRCz11
UCSC	21	-	GRCz11
Vega	21	10,663,526 - 10,666,595	GRCv10

Mapped Clones containing rx3
CH211-233A1	Chr: 21 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
s399	21	10,757,057	GRCz11	DIRECT	Loosli et al., 2003
sa29528	21	12,122,195	GRCz12tu	DIRECT	Sealy et al., 2025
	21	10,757,122	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	21	10,664,494	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	21	9,292,441	Zv9	DIRECT	Busch-Nentwich et al., 2013
t25181	21	10,757,004	GRCz11	DIRECT	Rojas-Munoz et al., 2005
t25327	21	10,758,387	GRCz11	DIRECT	Rojas-Munoz et al., 2005
w29	21	10,757,057	GRCz11	DIRECT	ZFIN Curated Data
hu499	21		GRCz11	OTHER_MAPPING	ZFIN Curated Data
ne2611	21		GRCz11	OTHER_MAPPING	ZFIN Curated Data
rx3_unspecified	21		GRCz11	OTHER_MAPPING	ZFIN Curated Data
s399	21		GRCz11	OTHER_MAPPING	ZFIN Curated Data
t25181	21		GRCz11	OTHER_MAPPING	ZFIN Curated Data
t25327	21		GRCz11	OTHER_MAPPING	ZFIN Curated Data
w29	21		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
21	50.9 cM	rx3	Mother of Pearl (MOP)	Postlethwait, John H.	Data
21	42.7 cM	rx3	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z12068	SSLP	21		Rojas-Munoz et al., 2005	rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068 ...
z17336	SSLP	21		Rojas-Munoz et al., 2005	rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068 ...

Chr 21

rx3 was located on LG21 between markers Z17336 (3/720 recombinants) and z12068 (5/48 recombinants).

Genomic Feature s399 is an allele of rx3

Marker	Type	Chr	Distance	Publication / Person	Comments
z10432	SSLP	21		Loosli et al., 2003

Genomic Feature w29 is an allele of rx3

Marker	Type	Chr	Distance	Publication / Person	Comments
z10432	SSLP	21		Kennedy et al., 2004	Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to rx3 using SSLPs.
z7925	SSLP	21		Kennedy et al., 2004	Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to rx3 using SSLPs.

Genomic Feature w29 is an allele of rx3

Chr 21

Kennedy et al. (2004, Dev. Biol. 270(2):336-349) mapped chk w29 to LG 21 corresponding to ...

Genomic Feature s399 is an allele of rx3

Chr 21

Mapping Details