ZFIN ID: ZDB-GENE-990415-171

Mapping Details

Gene Name: cadherin 2, type 1, N-cadherin (neuronal)
Symbol: cdh2
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 20 20,207,306 - 20,287,577 GRCz12tu
NCBI Map Viewer 20 20,207,306 - 20,287,577 GRCz12tu
Ensembl 20 17,739,923 - 17,819,238 GRCz11
NCBI Map Viewer 20 17,740,104 - 17,819,238 GRCz11
UCSC 20 - GRCz11
Vega 20 17,840,340 - 17,919,655 GRCv10
Mapped Clones containing cdh2
DKEYP-38F5 Chr: 20 Details
CH73-317E11 Chr: 20 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source Citations
fr7 20 17,802,963 GRCz11 DIRECT Lele et al., 2002
hi1389Tg 20 17,745,615 - 17,745,616 GRCz11 DIRECT ZFIN Curated Data
hi3096Tg 20 17,746,175 - 17,746,176 GRCz11 DIRECT ZFIN Curated Data
hi3644Tg 20 17,746,387 - 17,746,388 GRCz11 DIRECT ZFIN Curated Data
m117 20 17,791,592 GRCz11 DIRECT ZFIN Curated Data
rw95 20 17,803,604 GRCz11 DIRECT Masai et al., 2003
sa206 20 20,210,704 GRCz12tu DIRECT Sealy et al., 2025
20 17,743,502 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 17,843,919 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 17,789,419 Zv9 DIRECT Busch-Nentwich et al., 2013
sa11989 20 20,271,138 GRCz12tu DIRECT Sealy et al., 2025
20 17,803,635 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 17,904,052 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 17,849,552 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15918 20 20,270,521 GRCz12tu DIRECT Sealy et al., 2025
20 17,803,010 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 17,903,427 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 17,848,927 Zv9 DIRECT Busch-Nentwich et al., 2013
sa16882 20 20,210,780 GRCz12tu DIRECT Sealy et al., 2025
20 17,743,578 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 17,843,995 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 17,789,495 Zv9 DIRECT Busch-Nentwich et al., 2013
sa32283 20 20,271,108 GRCz12tu DIRECT Sealy et al., 2025
20 17,803,605 GRCz11 DIRECT Busch-Nentwich et al., 2013
20 17,904,022 GRCz10 DIRECT Busch-Nentwich et al., 2013
20 17,849,522 Zv9 DIRECT Busch-Nentwich et al., 2013
tb8 20 17,798,887 GRCz11 DIRECT Warga et al., 2007
tm101 20 17,803,003 GRCz11 DIRECT Lele et al., 2002
la013796Tg 20 17,791,696 - 17,791,706 Zv9 ZFIN_Zv9
la021425Tg 20 17,793,303 - 17,793,313 Zv9 ZFIN_Zv9
la021426Tg 20 17,793,465 - 17,793,475 Zv9 ZFIN_Zv9
la021427Tg 20 17,809,294 - 17,809,304 Zv9 ZFIN_Zv9
cdh2_unspecified 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
fr7 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
hi1389Tg 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
hi3096Tg 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
hi3644Tg 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
la013796Tg 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
la021425Tg 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
la021426Tg 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
la021427Tg 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
m117 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
p79emcf 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
r210 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
rw95 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
rw707 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
tb8 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
tc248c 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
tg1a 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
tg299b 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
tj250a 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
tm101 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
vu91 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
vu125 20 GRCz11 OTHER_MAPPING ZFIN Curated Data
wi440Tg 20 GRCz11 OTHER_MAPPING ZFIN Curated Data

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
20 487.37 cR ncad Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
20 1948.0 cR cdh2 Goodfellow T51 (T51) Palardy, Greg Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z3964 SSLP 20 Lele et al., 2002 Lele et al. 2002 (Development 129:3281-3294) report mapping cdh2 to Linkage Group 20, indistinguishably close to SSLP marker z3964.
z9343 SSLP 20 0.35 cM Masai et al., 2003 Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z7171 SSLP 20 Masai et al., 2003 Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z21170 SSLP 20 Masai et al., 2003 Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z3954 SSLP 20 Masai et al., 2003 Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z23564 SSLP 20 Masai et al., 2003 Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z9794 SSLP 20 Masai et al., 2003 Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z10056 SSLP 20 Masai et al., 2003 Masai et al. (2003 Dev. 130:2479-2494) reported no recombination between the rw95 allele of pac and the SSLP z9343 in 290 meioses (<0.35 cM).
z3964 SSLP 20 0.23 cM Warga et al., 2007
z6425 SSLP 20 0.69 cM Warga et al., 2007

OTHER MAPPING INFORMATION
Chr 20 Lele et al., 2002 Lele et al. 2002 (Development 129:3281-3294) report mapping cdh2 to Linkage Group 20,  ...
Markers Encoded by cdh2
ft03g07 Chr: 20 Details
Genomic Feature fr7 is an allele of cdh2
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