Genomic Feature
cq47
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 18: 30568104 - 30568160 (GRCz11) (1) Details
- Nucleotide change
- GGACTGCAGTGGGAGGATGAGGACCGCACTATGTTTCGAATCCCCTGGAAACATGCG/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 57 bp deleted (1)
- Transcript Consequence
- Missense (1)
- Protein Consequence
- Amino Acid Deletion: 19 AA missing (1)
- Flanking Sequence
-
CAGAGGTCAATATATTTATTCATGCATCAGATTTATCTATATCTATTGGTGTATGAATACACATTGCCAAGTCCTTTAGCATATATTTCATAATCCTATTTATGGGATCTTCAGGAGAGTTCAGTAAATTGAGCTTAGGTATAAAGTGGATGAACCTGTAAAGTCCCCTTCCCCTCTTTTCCTTTCAGACAGATTTCTTGTAAATGCCTCCGTTTCGTGTAATCTCATTTACATATTCATGGTACGGCAACATAAGGCGTAGAGATTGGACGCCTTGGAGTTGCGCAAGCCAATCCGTTCTCACTACACTCTCCGTTCCCTTGCGCGGGTGTCTTTTAGATTATAAATAAAGCTGCTTGGATGCCGTGAGTATGTACTTTATAATCCTCAGCTGCTGTTTGTAACGGCATACTAGTGAAGTAAAGGTCTACAAGATGAACTCGGGCGGTCGCAGACTGAAACAGTGGCTTATAGAACAGATAAACAGTAACATCTATAAT
GGACTGCAGTGGGAGGATGAGGACCGCACTATGTTTCGAATCCCCTGGAAACATGCG/- GGAAAACAAGATTACAATCAAGAGGTGGATGCGTCCATTTTCAAAGTAAGCGAAACATTATAGTAATAATAATAGTAGATTTAACAGTAACAATATGATTAAAAATAATGCAGCATTGCTATATTATTATTATTATTATTATTATTATTAATATTAATATTAATAATAAAAATAATAATAATATTAATAATAATATTATGGTTGTTATTGGAAAAAGTCAGATTTTTTCAGACTGTTATTAGATCATAGATCCCTGTGTACATGCAATTTGTCACAATCATAACATTTGAACTTAGTTATTTTCGATTTTGTCACAGTTTGATTGTATATTGTCTGTTTATTCTAATGTCTTCATTGCCAAATTATAACTTAATAATGCGTAAGGTATTGACTATTTTTTCTTATTGTTACATCAACGTTTTGGTTCACCAAAAAAAAAAAAAAAAAAAAAAACATGTTTTAATGTACCATAATGTCATTTCAATCTGAGACTTTCGTTT - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
irf8cq47/cq47 (AB) | Homozygous | ♀+/- ♂+/- | 2 figures from Zhao et al., 2017 | Fig. 1 from Zhao et al., 2017 |
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Supplemental Information
- Genotyping protocol
- None
- Li, X., Wang, L., Qin, X., Chen, X., Li, L., Huang, Z., Zhang, W., Liu, W. (2022) Estrogens revert neutrophil hyperplasia by inhibiting Hif1α-cMyb pathway in zebrafish myelodysplastic syndromes models. Cell death discovery. 8:323
- Zou, D., Hu, W., Qin, J., Wei, Z., Wang, D., Li, L. (2021) Rapid orderly migration of neutrophils after traumatic brain injury depends on MMP9/13. Biochemical and Biophysical Research Communications. 579:161-167
- Wei, Z., Li, C., Zhang, Y., Lin, C., Zhang, Y., Shu, L., Luo, L., Zhuo, J., Li, L. (2020) Macrophage-Derived IL-1β Regulates Emergency Myelopoiesis via the NF-κB and C/ebpβ in Zebrafish. Journal of immunology (Baltimore, Md. : 1950). 205(10):2694-2706
- Zhao, F., Shi, Y., Huang, Y., Zhan, Y., Zhou, L., Li, Y., Wan, Y., Li, H., Huang, H., Ruan, H., Luo, L., Li, L. (2017) Irf8 regulates the progression of myeloproliferative neoplasm (MPN)-like syndrome via Mertk signaling in zebrafish. Leukemia. 32(1):149-158
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