Genomic Feature
vu613
- ID
- ZDB-ALT-180521-3
- Name
- vu613
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Mchaourab Laboratory
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 5: 57641743 - 57641752 (GRCz11) (1) Details
- Nucleotide change
- ATCAATCCCC/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 10 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
CCTGGCACAGTTTTCTCAGCCGCGTTCATTGTCAGTTTCTGTAAAGACTAAAACCTCCAAAATACACACGGGCACATCACCTCACGGGCATCCTAATCTCCGTTGGCATTAAATCTAGCCACTGGAATGCCAAGCACCTACAAACTTAACTCAATCCTGGCAGGTTCGCCGGACCAGACAGCGCAGATTCCAGTGAACACATGCGGGAGGCACTATCATCACAATTAAGGGCTCACGCTGTAATCCAGCCGGTATCTGCGAGAACTGAAATCCGATCAGCTCTTTGGATAAATACTGTACAGAGAGTGATGGAGGGAAGAGGGGAAGGGGAGAACACAGTGGGAGGGCTGCAGTGAAAGAGGCAAATGAACGTCATTCACATAATTATTCCAAAAAAGGTCCGTAGTGGGCTCGTCTGCCAGGGGCCGTCAGTATCACTCTATTTAAGTGCGTAGACAGAAGATTTGCAGAAGAGGCCCAGACTCAAAATGGACATCGCC
ATCAATCCCC/- CGTTCCGGCGCATCTTATTTCCTATCTTCTTTCCCCGCCGGCAATTTGGGGAGCATATTACTGAGGCCGACGTGATCTCCTCATTGTACTCCCAACGATCTTCCTTTCTTCGCAGTCCAAGCTGGATGGAAAGCGGAGTTTCTGAGGTGAGCTACAAAAAGTTGGTGTTCAGTGGCTTTTAAAAAAAGTTGTTGATTTCAATACATTTTTTAATATTAGAGTTACTGTATGAGGAAAGTTGAGGAGTCACGCGTCACCCTTAAAGTAAAAAAGAGTTTCTTTTTTTTTTTTTTGTTGAAAACAAAAGCAGATGTTTTCAAGAATGTTGGAAATCAGCAGCCGTTTACCTTCTAAAGTAGCCTAGGGGGAAACAATGTTTGATGATTTTTTAAAATTCATAATTGAGTGCTACATCTTTTAAGAATTTTAATTAGTGAACAGTTGGCTATACTCTCGATTTAATTTGTTAATATGGTAACGTTTTATTATAGCAATAATAC - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
cryabbvu613/vu613 (AB) | Homozygous | ♀+/- ♂+/- | 4 figures from Mishra et al., 2018 | ||
cryabbvu613/vu613; vu614Tg | Complex | Fig. 6 from Mishra et al., 2018 | |||
cryabavu612/vu612; cryabbvu613/vu613 (AB) | Complex | 2 figures from Mishra et al., 2018 | |||
cryabavu612/vu612; cryabbvu613/vu613; vu617Tg | Complex | Fig. 5 from Wu et al., 2018 |
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Supplemental Information
- Genotyping protocol
- None
- Mishra, S., Wu, S.Y., Fuller, A.W., Wang, Z., Rose, K.L., Schey, K.L., Mchaourab, H.S. (2018) Loss of αB-crystallin function in zebrafish reveals critical roles in the development of the lens and stress resistance of the heart. The Journal of biological chemistry. 293(2):740-753
- Wu, S.Y., Zou, P., Mishra, S., Mchaourab, H.S. (2018) Transgenic zebrafish models reveal distinct molecular mechanisms for cataract-linked αA-crystallin mutants. PLoS One. 13:e0207540
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