Transcript

paxbp1-205

ID

ZDB-TSCRIPT-091110-421

Name

paxbp1-205 Nomenclature History

Previous Names

ch211-153m12.1-004
ottdart00000044100
zgc:158234-005

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

paxbp1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000139332 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000139332.3|gene_biotype:protein_coding|ENSDARG00000062361.7 transcript_biotype:nonsense_mediated_decay gene_symbol:paxbp1 cdna chromosome:GRCz11:10:24426929:24435439:1
AATGCCCGGCGCTATCAGCAGATCCAGGAGGATCTGGAGG
CCTCCAAAAAGGCCATCCGGGTCCTGGAGGGCTCCTCTGT
AGAGGCCGCAGACAAATATAGATTCTTGCAAGAAATGCGA
GGGTATGTTGGAGACTTGCTTGAGTGTTTGAGTGAAAAGG
TGCCTGTCATTCTGGAGCTAGAGGCCGCCATGCACCAGTT
ACTTCGACAGCGGGCGTCCCGTCTCGTCCAGAGAAGACAG
GATGATATTAAAGATGAATCGTCGGAGTTTTCCAGCCTTT
CAAGTCAGTCCATCTTGAAGGTAAGGCTGTTATGGCCCCT
AACCTGGACTCATTTGGCCGAGATCGTACTGCCTATCTGG
AGCTCGCAAAGCAAAGGAGGATAGCTGAAAGAGAAGCCAG
ACGAACTCGTCGCAGACAAGCTCGTGAGCAGAACGACAAG
AGAGCAGAGCATAAGGAAGGACTGTCTAGTGACGATGAAG
AGACGTCCACTGACATTACCAGCTTCGACTCAGAGAGAGA
GCGCATCTTAAAAGAGTCAAAGAAGGTGTTTGAGGATGTG
GTGGAGGATTTCCATTCTCTGGACAATATCAAATCTCACT
TTGAGACCTGGAGAAAGCTGTATTACAGCTGCTACAGAGA
CGCCTACATTGGATTGTGTCTGCCCAAACTCTTCAACCCT
CTTATTCGGCTGCAGCTTATCTCGTGGTCCCCACTGGAGG
TGGAGTGCTCCAACTTTGAGTACATGCTGTGGTTTGAGTC
TCTGCTCTTCTATGGCTGTGGGGAGCAAAGTGCTCTAAAG
AAAGAGGAAG

OTTDART00000044100 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000044100|OTTDARG00000027649|ZDB-GENE-070112-2352 zgc:158234|OTTDARP00000034927 CH211-69K21.1-005 LG_ AL929315.8 Danio rerio protein_coding NOVEL, 810 bp
AATGCCCGGCGCTATCAGCAGATCCAGGAGGATCTGGAGG
CCTCCAAAAAGGCCATCCGGGTCCTGGAGGGCTCCTCTGT
AGAGGCCGCAGACAAATATAGATTCTTGCAAGAAATGCGA
GGGTATGTTGGAGACTTGCTTGAGTGTTTGAGTGAAAAGG
TGCCTGTCATTCTGGAGCTAGAGGCCGCCATGCACCAGTT
ACTTCGACAGCGGGCGTCCCGTCTCGTCCAGAGAAGACAG
GATGATATTAAAGATGAATCGTCGGAGTTTTCCAGCCTTT
CAAGTCAGTCCATCTTGAAGGTAAGGCTGTTATGGCCCCT
AACCTGGACTCATTTGGCCGAGATCGTACTGCCTATCTGG
AGCTCGCAAAGCAAAGGAGGATAGCTGAAAGAGAAGCCAG
ACGAACTCGTCGCAGACAAGCTCGTGAGCAGAACGACAAG
AGAGCAGAGCATAAGGAAGGACTGTCTAGTGACGATGAAG
AGACGTCCACTGACATTACCAGCTTCGACTCAGAGAGAGA
GCGCATCTTAAAAGAGTCAAAGAAGGTGTTTGAGGATGTG
GTGGAGGATTTCCATTCTCTGGACAATATCAAATCTCACT
TTGAGACCTGGAGAAAGCTGTATTACAGCTGCTACAGAGA
CGCCTACATTGGATTGTGTCTGCCCAAACTCTTCAACCCT
CTTATTCGGCTGCAGCTTATCTCGTGGTCCCCACTGGAGG
TGGAGTGCTCCAACTTTGAGTACATGCTGTGGTTTGAGTC
TCTGCTCTTCTATGGCTGTGGGGAGCAAAGTGCTCTAAAG
AAAGAGGAAG

Related Transcripts

Transcripts related to paxbp1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	paxbp1-205	Ensembl	810 nt
mRNA	paxbp1-202 (1) Ensembl	Ensembl	2,368 nt	Select Tool ZFIN BLAST
mRNA	paxbp1-204 (1) Ensembl	Ensembl	3,319 nt	Select Tool ZFIN BLAST
ncRNA	zgc:158234-003 (1) Ensembl	Ensembl	1,026 nt	Select Tool ZFIN BLAST
ncRNA	zgc:158234-004 (1) Ensembl	Ensembl	789 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations