Gene
pcdh9
- ID
- ZDB-GENE-091015-1
- Name
- protocadherin 9
- Symbol
- pcdh9 Nomenclature History
- Previous Names
-
- si:ch211-165a18.1
- Type
- protein_coding_gene
- Location
- Chr: 6 Mapping Details/Browsers
- Description
- Is expressed in brain; eye; spinal cord; and statoacoustic (VIII) ganglion.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 10 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Targeting Reagent | Created Alleles | Citations |
|---|---|---|
| CRISPR1-pcdh9 | Zebrafish Nomenclature Committee | |
| CRISPR2-pcdh9 | Habicher et al., 2022 | |
| CRISPR3-pcdh9 | Habicher et al., 2022 |
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Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
No data available
Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-104F23 | ZFIN Curated Data | |
| Contained in | BAC | CH73-325A8 | ZFIN Curated Data | |
| Contained in | BAC | CH211-165A18 | ZFIN Curated Data | |
| Contained in | BAC | CH211-222L15 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| Genomic | GenBank:CR361554 (1) | 187638 nt |
- Habicher, J., Manuel, R., Pedroni, A., Ferebee, C., Ampatzis, K., Boije, H. (2022) A new transgenic reporter line reveals expression of protocadherin 9 at a cellular level within the zebrafish central nervous system. Gene expression patterns : GEP. 44:119246
- Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
- Cooper, S.R., Emond, M.R., Duy, P.Q., Liebau, B.G., Wolman, M.A., Jontes, J.D. (2015) Protocadherins control the modular assembly of neuronal columns in the zebrafish optic tectum. The Journal of cell biology. 211:807-14
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Blevins, C., Emond, M.R., Biswas, S., and Jontes, J.D. (2011) Differential expression, alternative splicing, and adhesive properties of the zebrafish delta1-protocadherins. Neuroscience. 199:523-34
- Liu, Q., Chen, Y., Pan, J.J., and Murakami, T. (2009) Expression of protocadherin-9 and protocadherin-17 in the nervous system of the embryonic zebrafish. Gene expression patterns : GEP. 9(7):490-496
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