ZFIN is now using GRCz12tu for Genomic Data
Gene
loxl5b
- ID
- ZDB-GENE-070818-3
- Name
- lysyl oxidase-like 5b
- Symbol
- loxl5b Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable protein-lysine 6-oxidase activity. Acts upstream of or within notochord morphogenesis. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in notochord and prechordal plate.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 1 Figure from Gansner et al., 2007
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Lysyl oxidase | Lysyl oxidase, conserved site | Lysyl oxidase-like protein |
|---|---|---|---|---|---|
| UniProtKB:A6MH35 | InterPro | 444 | |||
| UniProtKB:F1QGY9 | InterPro | 445 | |||
| UniProtKB:A0A8M6Z7N5 | InterPro | 400 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
loxl5b-201
(1)
|
Ensembl | 1,911 nt | ||
| mRNA |
loxl5b-202
(1)
|
Ensembl | 4,675 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers