Gene

ctdspla

ID

ZDB-GENE-060825-333

Name

CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like a

Symbol

ctdspla Nomenclature History

Previous Names

wu:fj98d02
zgc:153196

Type

protein_coding_gene

Location

Chr: 24 Mapping Details/Browsers

Description

Predicted to have RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human CTDSPL (CTD small phosphatase like).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ctdspla Human Ortholog

No data available

Associated With ctdspla Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR004274	FCP1 homology domain
Domain	IPR011948	Dullard phosphatase domain, eukaryotic
Family	IPR040078	CTD small RNA polymerase II polypeptide A phosphatase-like
Family	IPR050365	Mitochondrial import inner membrane translocase subunit TIM50
Homologous_superfamily	IPR023214	HAD superfamily
Homologous_superfamily	IPR036412	HAD-like superfamily

Domain Details Per Protein

Protein	Length	CTD small RNA polymerase II polypeptide A phosphatase-like	Dullard phosphatase domain, eukaryotic	FCP1 homology domain	HAD-like superfamily	HAD superfamily	Mitochondrial import inner membrane translocase subunit TIM50
UniProtKB:Q0P4B2 InterPro	220
UniProtKB:A0A0R4IC10 InterPro	276
UniProtKB:A0A8M1NAQ0 InterPro	265

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ctdspla-201 (1) Ensembl	Ensembl	1,914 nt	Select Tool
mRNA	ctdspla-206 (1) Ensembl	Ensembl	831 nt	Select Tool ZFIN BLAST
ncRNA	ctdspla-002 (1) Ensembl	Ensembl	1,551 nt	Select Tool
ncRNA	ctdspla-003 (1) Ensembl	Ensembl	792 nt	Select Tool
ncRNA	ctdspla-004 (1) Ensembl	Ensembl	461 nt	Select Tool
ncRNA	ctdspla-005 (1) Ensembl	Ensembl	369 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations