Gene

ush1c

ID
ZDB-GENE-060312-41
Name
Usher syndrome 1C
Symbol
ush1c Nomenclature History
Previous Names
  • harmonin
  • zgc:136806
Type
protein_coding_gene
Location
Chr: 25 Mapping Details/Browsers
Description
Acts upstream of or within neuron development; startle response; and synapse organization. Predicted to be located in cell projection. Predicted to be part of stereocilia ankle link complex. Predicted to be active in several cellular components, including cilium; photoreceptor inner segment; and stereocilium tip. Is expressed in brain; hair cell; pleuroperitoneal region; sensory system; and trunk musculature. Used to study Usher syndrome. Human ortholog(s) of this gene implicated in Usher syndrome; Usher syndrome type 1; Usher syndrome type 1C; and autosomal recessive nonsyndromic deafness 18A. Orthologous to human USH1C (USH1 protein network component harmonin).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
9 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
7 figures from 3 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With ush1c Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
autosomal recessive nonsyndromic deafness 18A Alliance Deafness, autosomal recessive 18A 602092
Usher syndrome type 1C Alliance Usher syndrome, type 1C 276904
1 - 2 of 2
Associated With ush1c Via Experimental Models
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001478 PDZ domain
Domain IPR030237 Harmonin, N-terminal
Family IPR051844 Sensory Perception USH2 Complex Protein
Homologous_superfamily IPR036034 PDZ superfamily
1 - 4 of 4
Domain Details Per Protein
Protein Additional Resources Length Harmonin, N-terminal PDZ domain PDZ superfamily Sensory Perception USH2 Complex Protein
UniProtKB:A0A8M3AZQ5 InterPro 586
UniProtKB:Q29RC0 InterPro 548
UniProtKB:A0AB32TJ22 InterPro 973
1 - 3 of 3
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA ush1c-201 (1) Ensembl 1,915 nt
mRNA ush1c-202 (1) Ensembl 975 nt
mRNA ush1c-203 (1) Ensembl 977 nt
mRNA ush1c-204 (1) Ensembl 1,699 nt
1 - 4 of 4
Interactions and Pathways
No data available
Antibodies
Name Type Antigen Genes Isotype Host Organism Assay Source Citations
Ab1-ush1c polyclonal Rabbit
  • IHC
1
1 - 1 of 1
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations