ZFIN is now using GRCz12tu for Genomic Data
Gene
pcdh1g9
- ID
- ZDB-GENE-050609-5
- Name
- protocadherin 1 gamma 9
- Symbol
- pcdh1g9 Nomenclature History
- Previous Names
-
- DrPcdh1g8 (1)
- Type
- protein_coding_gene
- Location
- Chr: 10 Mapping Details/Browsers
- Genome Assembly
- GRCz11
- Annotation Status
- Unknown
- Description
- Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including PCDHGC5 (protocadherin gamma subfamily C, 5).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Lu et al., 2024
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR020894 | Cadherin conserved site |
| Domain | IPR002126 | Cadherin-like |
| Domain | IPR013164 | Cadherin, N-terminal |
| Domain | IPR031904 | Cadherin, C-terminal catenin-binding domain |
| Domain | IPR032455 | Cadherin, cytoplasmic C-terminal domain |
| Family | IPR050174 | Protocadherin/Cadherin-related Cell Adhesion |
| Homologous_superfamily | IPR015919 | Cadherin-like superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Cadherin conserved site | Cadherin, C-terminal catenin-binding domain | Cadherin, cytoplasmic C-terminal domain | Cadherin-like | Cadherin-like superfamily | Cadherin, N-terminal | Protocadherin/Cadherin-related Cell Adhesion |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:I6LC28 | InterPro | 890 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
pcdh1g9-202
(1)
|
Ensembl | 838 nt | ||
| aberrant processed transcript |
pcdh1g9-203
(1)
|
Ensembl | 4,472 nt | ||
| mRNA |
pcdh1g9-201
(1)
|
Ensembl | 2,911 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers