Gene

pcdh1g9

ID
ZDB-GENE-050609-5
Name
protocadherin 1 gamma 9
Symbol
pcdh1g9 Nomenclature History
Previous Names
  • DrPcdh1g8 (1)
Type
protein_coding_gene
Location
Chr: 10 Mapping Details/Browsers
Description
Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including PCDHGC5 (protocadherin gamma subfamily C, 5).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa38795Allele with one point mutationUnknownPremature StopENU
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
CRISPR1-pcdh1g
    Tsai et al., 2020
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    Human Disease
    Associated With pcdh1g9 Human Ortholog
    No data available
    Associated With pcdh1g9 Via Experimental Models
    No data available
    Gene Ontology
    Protein Domains
    Domain, Family, and Site Summary
    Type InterPro ID Name
    Conserved_site IPR020894 Cadherin conserved site
    Domain IPR002126 Cadherin-like
    Domain IPR013164 Cadherin, N-terminal
    Domain IPR031904 Cadherin, C-terminal catenin-binding domain
    Domain IPR032455 Cadherin, cytoplasmic C-terminal domain
    1 - 5 of 7 Show all
    Domain Details Per Protein
    Protein Additional Resources Length Cadherin conserved site Cadherin, C-terminal catenin-binding domain Cadherin, cytoplasmic C-terminal domain Cadherin-like Cadherin-like superfamily Cadherin, N-terminal Protocadherin/Cadherin-related Cell Adhesion
    UniProtKB:I6LC28 InterPro 890
    1 - 1 of 1
    Transcripts
    Genome Browsers
    Genome Build: GRCz11Chromosome: 10
    Type Name Annotation Method Has Havana Data Length (nt) Analysis
    aberrant processed transcript pcdh1g9-202 (1) Ensembl 838 nt
    aberrant processed transcript pcdh1g9-203 (1) Ensembl 4,472 nt
    mRNA pcdh1g9-201 (1) Ensembl 2,911 nt
    1 - 3 of 3
    Interactions and Pathways
    No data available
    Antibodies
    No data available
    Plasmids
    No data available
    Constructs
    No data available
    Marker Relationships
    Relationship Marker Type Marker Accession Numbers Citations
    Contained inBACDKEY-179G5ZFIN Curated Data
    Contained inBACDKEY-263M6ZFIN Curated Data
    EncodescDNAMGC:193554ZFIN Curated Data
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    Sequences
    Orthology
    Comparative Orthology
    Alliance
    Gene Tree
    Ensembl
    No data available
    Citations
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