Transcript

pcdh1g9-202

ID

ZDB-TSCRIPT-141209-1085

Name

pcdh1g9-202 Nomenclature History

Previous Names

pcdh1g9-003

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

pcdh1g9 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000158138 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000158138.2|gene_biotype:protein_coding|ENSDARG00000057519.6 transcript_biotype:nonsense_mediated_decay cdna chromosome:GRCz11:10:21701551:21818605:1
CGGAGACTATTGACTAACAGCGACCTTACGGGATTCATTT
GTGGATATTTCGATTGCAAATCTTCATGAGCAGTCTGTAT
TATAATTTGTGTATAAAATGTTTGTCATAAGAGCATTTAT
AAGGATTATATGTTACCTAGTGCGAGGACAACCATTGCAT
CCTGCTTATCCATGGAGGGTCTTATTCATCATGGCCGTTT
TTTCGATCTTAAAGACAAACGCACAGATTCGGTATTCAGT
TCCAGAGGAAATGAAGAAAGGATCTCTTATCGGGAATATA
GCTCATGATCTTGGTCTGGATGTTCAAAGACTGCGCTCGG
GTCGAGCTCGTATCGTGTCTGGCGACAGCACCGACAAAAG
CCACCTAATACTGACTGGCGATTTCCCCCAAACCAGAGGC
CTGGACCCAGCGGCCAACACAGGTTCCACACCCTGCAGCA
GAGATGGACTCCATACGAGAAGTCCAGGGCTGGAGCACGT
CCTGAAGAGGCAGGTGCCGGTGCTGGTGTGATAGCAGGAA
CAGGACCATGGCCCAACCCCCCTACTGAGGCTGAACAGCT
CCAGGCTATGATGGCAGCAGCAAACGCAAGTGAAGCCACT
GCGACTCTTGGCCCTCGCTACAATCTACAGTATGGCCCGG
ATTACCGTCAGAACGTCTACATCCCAGGCAGCACTGCCAC
CCTTACAGCCAACCCTCAGCAACAGGTTCTCCAGCAGGCC
CTTCCTCCACCACAGGCCCTTCCACCTACCGAAGCCCCCA
AAGCGGCTCAAACACCAGCCAGTAAGAAGAAACCCACAAA
GAAAGACAAGAAGTAAGACCTGTGGAATAGCTGAAGAA

OTTDART00000061836 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000061836|OTTDARG00000031005|ZDB-GENE-050609-5 pcdh1g9|OTTDARP00000048356 pcdh1g9-003 LG_none CT737184.6,CR774179.7 Danio rerio protein_coding KNOWN, 838 bp
CGGAGACTATTGACTAACAGCGACCTTACGGGATTCATTT
GTGGATATTTCGATTGCAAATCTTCATGAGCAGTCTGTAT
TATAATTTGTGTATAAAATGTTTGTCATAAGAGCATTTAT
AAGGATTATATGTTACCTAGTGCGAGGACAACCATTGCAT
CCTGCTTATCCATGGAGGGTCTTATTCATCATGGCCGTTT
TTTCGATCTTAAAGACAAACGCACAGATTCGGTATTCAGT
TCCAGAGGAAATGAAGAAAGGATCTCTTATCGGGAATATA
GCTCATGATCTTGGTCTGGATGTTCAAAGACTGCGCTCGG
GTCGAGCTCGTATCGTGTCTGGCGACAGCACCGACAAAAG
CCACCTAATACTGACTGGCGATTTCCCCCAAACCAGAGGC
CTGGACCCAGCGGCCAACACAGGTTCCACACCCTGCAGCA
GAGATGGACTCCATACGAGAAGTCCAGGGCTGGAGCACGT
CCTGAAGAGGCAGGTGCCGGTGCTGGTGTGATAGCAGGAA
CAGGACCATGGCCCAACCCCCCTACTGAGGCTGAACAGCT
CCAGGCTATGATGGCAGCAGCAAACGCAAGTGAAGCCACT
GCGACTCTTGGCCCTCGCTACAATCTACAGTATGGCCCGG
ATTACCGTCAGAACGTCTACATCCCAGGCAGCACTGCCAC
CCTTACAGCCAACCCTCAGCAACAGGTTCTCCAGCAGGCC
CTTCCTCCACCACAGGCCCTTCCACCTACCGAAGCCCCCA
AAGCGGCTCAAACACCAGCCAGTAAGAAGAAACCCACAAA
GAAAGACAAGAAGTAAGACCTGTGGAATAGCTGAAGAA

Related Transcripts

Transcripts related to pcdh1g9

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	pcdh1g9-202	Ensembl	838 nt
aberrant processed transcript	pcdh1g9-203 (1) Ensembl	Ensembl	4,472 nt	Select Tool ZFIN BLAST
mRNA	pcdh1g9-201 (1) Ensembl	Ensembl	2,911 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations