Gene

sycp1

ID

ZDB-GENE-040910-6

Name

synaptonemal complex protein 1

Symbol

sycp1 Nomenclature History

Previous Names

isa (1)

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to be involved in synaptonemal complex assembly. Predicted to localize to synaptonemal complex. Is expressed in spermatocyte. Orthologous to human SYCP1 (synaptonemal complex protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

13 figures from 4 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 6 figures from Saito et al., 2011
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sycp1 Human Ortholog

No data available

Associated With sycp1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR008827	Synaptonemal complex protein 1

Domain Details Per Protein

Protein	Length	Synaptonemal complex protein 1
UniProtKB:F1QYS1 InterPro	1000

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	sycp1-201 (1) Ensembl	Ensembl		3,440 nt	Select Tool ZFIN BLAST
mRNA	sycp1-202 (1) Ensembl	Ensembl		560 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-sycp1	polyclonal	sycp1		Rat	IHC		3

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations