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ZIRC
ZFIN ID: ZDB-GENE-040905-2
Gene Name: transcription factor 25 (basic helix-loop-helix)
Gene Symbol: tcf25
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:101131 (1)

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(Including Attributions)
Location: Chr: 18 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding activity transcription factor activity; predicted to be involved in negative regulation of transcription by RNA polymerase II; predicted to localize to the nucleus;  ...
GENE EXPRESSION
All Expression Data: 8 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:101131]
  6 figures (13 images) from Thisse et al., 2004 [IMAGE:7157357]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa23323 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH tcf25 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tcf25 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process negative regulation of transcription by RNA polymerase II (more)
    Cellular Component nucleus (more)
    Molecular Function DNA-binding transcription factor activity (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006994 (1)
  • InterPro:IPR011990 (1)
  • Pfam:PF04910 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA tcf25-004 (1) 2326
    tcf25-005 (1) 673
    tcf25-006 (1) 536
    mRNA tcf25-202 (1) 2184
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM tcf25 No data available
    MARKER RELATIONSHIPS
    tcf25Contained in: [BAC] CH211-132F3 (1) (order this), CH211-220F20 (1) (order this)
    tcf25Encodes: [EST] IMAGE:7157357 (1) (order this)
    [cDNA] MGC:101131 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001005399 (1) 2250bp
    Genomic GenBank:CR457484 (1) 169672bp
    Select Tool
    Polypeptide UniProtKB:Q1L887 (1) 650aa
    Sequence Clusters UniGene:34263 (1)
    Sequence Information (all 15)
    ORTHOLOGY for tcf25 (Chr: 18)
    CITATIONS (20)