Gene

caprin1a

ID

ZDB-GENE-040801-226

Name

cell cycle associated protein 1a

Symbol

caprin1a Nomenclature History

Previous Names

wu:fb49b05
wu:fc35g01
zgc:92043 (1)

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Exhibits calcium ion binding activity and identical protein binding activity. Orthologous to human CAPRIN1 (cell cycle associated protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:6902638 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With caprin1a Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		Neurodegeneration, childhood-onset, with cerebellar ataxia and cognitive decline	620636
		Neurodevelopmental disorder with language impairment, autism, and attention deficit-hyperactivity disorder	620782

Associated With caprin1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR022070	Cytoplasmic activation/proliferation-associated protein-1 C term
Domain	IPR041637	Caprin-1 dimerization domain
Family	IPR028816	Caprin

Domain Details Per Protein

Protein	Length	Caprin	Caprin-1 dimerization domain	Cytoplasmic activation/proliferation-associated protein-1 C term
UniProtKB:Q6DBQ6 InterPro	657
UniProtKB:E7FDQ5 InterPro	670
UniProtKB:A0A8M2BJI8 InterPro	629

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	caprin1a-201 (1) Ensembl	Ensembl		2,706 nt	Select Tool ZFIN BLAST
mRNA	caprin1a-202 (1) Ensembl	Ensembl		2,790 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations