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ZIRC
ZFIN ID: ZDB-GENE-040426-893
Gene Name: GAR1 homolog, ribonucleoprotein
Gene Symbol: gar1    Nomenclature History

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Previous Names: nola1, zgc:56086 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have box H/ACA snoRNA binding activity. Involved in definitive hemopoiesis and rRNA processing. Predicted to localize to the box H/ACA snoRNP complex and telomerase holoenzyme complex. Orthologous to human GAR1 (GAR1 ribonucleoprotein).
Genome Resources: Alliance (1),  Gene:393950 (1),  Ensembl(GRCz11):ENSDARG00000076526 (1)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56086]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la019049Tg Transgenic Insertion Unknown Unknown DNA
sa22535 Point Mutation Unknown Missense, Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42439 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zf303Tg Transgenic Insertion Exon 1 Unknown DNA
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH gar1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH gar1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process definitive hemopoiesis (more)
    Cellular Component telomerase holoenzyme complex (more)
    Molecular Function RNA binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007504 (1)
  • InterPro:IPR009000 (1)
  • InterPro:IPR038664 (1)
  • Pfam:PF04410 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA gar1-201 (1)    Ensembl 2348
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM gar1 No data available
    MARKER RELATIONSHIPS
    gar1 Contained in: [BAC] CH73-36J8 (1) (order this)
    gar1 Encodes: [cDNA] MGC:56086 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200975 (1) 1284 bp
    Genomic GenBank:CU467639 (1) 118056 bp
    Select Tool
    Polypeptide UniProtKB:E7EXU2 (1) 230 aa
    Sequence Clusters UniGene:153451 (1)
    Sequence Information (all 17)
    ORTHOLOGY for gar1 ( Chr: 14 )
    CITATIONS (26)