Gene

rbpms2b

ID

ZDB-GENE-040426-741

Name

RNA binding protein, mRNA processing factor 2b

Symbol

rbpms2b Nomenclature History

Previous Names

rbpms2
Hermes (1)
zgc:55559 (1)
zgc:77170 (1)

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Enables mRNA binding activity. Acts upstream of or within several processes, including heart contraction; neuron projection morphogenesis; and regulation of retinal ganglion cell axon guidance. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including cardiovascular system; gonad; mesoderm; optic vesicle; and retina. Orthologous to human RBPMS2 (RNA binding protein, mRNA processing factor 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

20 figures from 11 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55559 (15 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Kaufman et al., 2018
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbpms2b Human Ortholog

No data available

Associated With rbpms2b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034787	RBPMS2, RNA recognition motif
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Nucleotide-binding alpha-beta plait domain superfamily	RBPMS2, RNA recognition motif	RNA-binding domain superfamily	RNA recognition motif domain
UniProtKB:Q7ZUL7	InterPro	200

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	rbpms2b-202 (1) Ensembl	Ensembl	768 nt	Select Tool ZFIN BLAST
mRNA	rbpms2b-201 (1) Ensembl	Ensembl	1,911 nt	Select Tool ZFIN BLAST
mRNA	rbpms2b-206 (1) Ensembl	Ensembl	764 nt	Select Tool ZFIN BLAST
mRNA	rbpms2b-207 (1) Ensembl	Ensembl	871 nt	Select Tool ZFIN BLAST
mRNA	rbpms2b-208 (1) Ensembl	Ensembl	317 nt	Select Tool ZFIN BLAST
ncRNA	rbpms2b-005 (1) Ensembl	Ensembl	730 nt	Select Tool ZFIN BLAST
ncRNA	rbpms2b-006 (1) Ensembl	Ensembl	502 nt	Select Tool ZFIN BLAST
ncRNA	rbpms2b-008 (1) Ensembl	Ensembl	832 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-rbpms2	polyclonal	rbpms2b		Rabbit	IHC		6

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations