Gene

caprin1b

ID

ZDB-GENE-040426-2020

Name

cell cycle associated protein 1b

Symbol

caprin1b Nomenclature History

Previous Names

caprin1
fe25d09
ik:tdsubc_2d9
wu:fa96f04
wu:fe25d09
wu:fj66h11
xx:tdsubc_2d9
zgc:55902

Type

protein_coding_gene

Location

Chr: 18 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in cell differentiation and negative regulation of translation. Predicted to localize to cytoplasm. Orthologous to human CAPRIN1 (cell cycle associated protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With caprin1b Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		Neurodegeneration, childhood-onset, with cerebellar ataxia and cognitive decline	620636
		Neurodevelopmental disorder with language impairment, autism, and attention deficit-hyperactivity disorder	620782

Associated With caprin1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR022070	Cytoplasmic activation/proliferation-associated protein-1 C term
Domain	IPR041637	Caprin-1 dimerization domain
Family	IPR028816	Caprin

Domain Details Per Protein

Protein	Length	Caprin	Caprin-1 dimerization domain	Cytoplasmic activation/proliferation-associated protein-1 C term
UniProtKB:A0A8M9P113 InterPro	694
UniProtKB:Q802U4 InterPro	695
UniProtKB:A0A8M9PM15 InterPro	694

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	caprin1b-201 (1) Ensembl	Havana	2654 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	caprin1b-202 (1) Ensembl	Havana	615 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	caprin1b-203 (1) Ensembl	Havana	595 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	caprin1b-205 (1) Ensembl	Ensembl	3373 nt	Select Tool ZFIN BLAST
ncRNA	caprin1b-004 (1) Ensembl	Havana	902 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations