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ZIRC
ZFIN ID: ZDB-GENE-040426-1873
Gene Name: RAD1 homolog (S. pombe)
Gene Symbol: rad1    Nomenclature History

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Previous Names: zgc:56502, zgc:77779

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 15 Mapping Details/Browsers
Description: Predicted to have 3'-5' exonuclease activity. Predicted to be involved in DNA damage checkpoint. Predicted to localize to the checkpoint clamp complex. Orthologous to human RAD1 (RAD1 checkpoint DNA exonuclease).
Genome Resources: Alliance (1),  Gene:393872 (1),  Ensembl(GRCz11):ENSDARG00000040559 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:56502]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH rad1 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH rad1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process DNA damage checkpoint (more)
Cellular Component nucleus (more)
Molecular Function 3'-5' exonuclease activity (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003011 (1)
  • InterPro:IPR003021 (1)
  • Pfam:PF02144 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rad1-201 (1)    Ensembl 1653
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rad1 No data available
    MARKER RELATIONSHIPS
    rad1 Contained in: [BAC] CH211-167J9 (1) (order this)
    rad1 Encodes: [cDNA] MGC:56502 (1) (order this), MGC:77779 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_200898 (1) 1624 bp
    Genomic GenBank:CR848814 (1) 79851 bp
    Select Tool
    Polypeptide UniProtKB:Q6P2T4 (1) 279 aa
    Sequence Clusters UniGene:77004 (1)
    Sequence Information (all 13)
    ORTHOLOGY for rad1 ( Chr: 15 )
    CITATIONS (16)