ZFIN ID: ZDB-GENE-040108-7
Gene Name: xin actin binding repeat containing 2a
Gene Symbol: xirp2a
Sequence Ontology ID : SO:0000704

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Previous Names: xirp2, sb:cb1045, wu:fc12g12, Xin beta6 (1)

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(Including Attributions)
Location: Chr: 6 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have actin binding activity and metal ion binding activity; predicted to be involved in actin cytoskeleton organization and heart development; predicted to localize to the cell junction;  ...
GENE EXPRESSION
All Expression Data: 42 figures from 16 publications
Directly Submitted Expression Data: 4 figures (12 images) from Thisse et al., 2001 [cb1045]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12933 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa26687 Point Mutation Unknown Unknown ENU
    sa40639 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH xirp2a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH xirp2a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process actin cytoskeleton organization (more)
    Cellular Component cell junction (more)
    Molecular Function actin binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001781 (1)
  • InterPro:IPR012510 (1)
  • InterPro:IPR030072 (1)
  • InterPro:IPR030107 (1)
  • PROSITE:PS00478 (1)
  • PROSITE:PS50023 (1)
  • PROSITE:PS51389 (1)
  • Pfam:PF00412 (1)
  • Pfam:PF08043 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA xirp2a-201 (1) 10784
    xirp2a-202 (1) 4032
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM xirp2a No data available
    MARKER RELATIONSHIPS
    xirp2aContained in: [BAC] DKEY-276L13 (order this)
    xirp2aEncodes: [EST] cb1045 (1), fc12g12
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_005165785 (1) 10991bp
    Genomic GenBank:BX511272 (1) 208912bp Blast at MegaBLAST
    Polypeptide UniProtKB:F8W4U4 (1) 3315aa
    Sequence Clusters UniGene:78041 (1)
    Sequence Information (all 21)
    OTHER xirp2a GENE PAGES
  • Alliance (1)
  • Gene:559746 (1)
  • VEGA:OTTDARG00000034131 (1)
  • Ensembl(GRCz11):ENSDARG00000071113 (2)
  • ORTHOLOGY for xirp2a (Chr: 6)
    CITATIONS (43)