Gene

ptprub

ID

ZDB-GENE-030131-7036

Name

protein tyrosine phosphatase receptor type Ub

Symbol

ptprub Nomenclature History

Previous Names

ptpru
fj42a04
fk66g06
RPTP-psi (1)
wu:fj42a04
wu:fk66g06 (1)
zmp:0000001038 (1)

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to have transmembrane receptor protein tyrosine phosphatase activity. Involved in somite specification. Predicted to localize to integral component of membrane. Orthologous to human PTPRU (protein tyrosine phosphatase receptor type U).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ptprub Human Ortholog

No data available

Associated With ptprub Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Active_site	IPR016130	Protein-tyrosine phosphatase, active site
Domain	IPR000242	Tyrosine-specific protein phosphatase, PTPase domain
Domain	IPR000387	Tyrosine-specific protein phosphatases domain
Domain	IPR000998	MAM domain
Domain	IPR003595	Protein-tyrosine phosphatase, catalytic
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR003961	Fibronectin type III
Family	IPR051622	Receptor-type Tyrosine-protein Phosphatases
Homologous_superfamily	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR029021	Protein-tyrosine phosphatase-like
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily

Domain Details Per Protein

Protein	Length	Concanavalin A-like lectin/glucanase domain superfamily	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin domain subtype	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	MAM domain	Protein-tyrosine phosphatase, active site	Protein-tyrosine phosphatase, catalytic	Protein-tyrosine phosphatase-like	Receptor-type Tyrosine-protein Phosphatases	Tyrosine-specific protein phosphatase, PTPase domain	Tyrosine-specific protein phosphatases domain
UniProtKB:A0A2R8QDT0 InterPro	1440
UniProtKB:A0A8M3AI77 InterPro	1433
UniProtKB:A0A286YB08 InterPro	1450
UniProtKB:A0A8M3ATI7 InterPro	1449
UniProtKB:A0A8M3AI73 InterPro	1447
UniProtKB:A0A8M3AQP2 InterPro	1449
UniProtKB:A0A8M9P7S6 InterPro	1443
UniProtKB:B3DK56 InterPro	1444
UniProtKB:A0A0R4INY1 InterPro	1444
UniProtKB:A0A8M3B1T0 InterPro	1430
UniProtKB:A0A8M3AQP8 InterPro	1439
UniProtKB:A0A0R4ITF5 InterPro	1434
UniProtKB:A0A8M3AJ78 InterPro	1443

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ptprub-201 (1) Ensembl	Ensembl	434 nt	Select Tool ZFIN BLAST
mRNA	ptprub-202 (1) Ensembl	Ensembl	4,547 nt	Select Tool ZFIN BLAST
mRNA	ptprub-203 (1) Ensembl	Ensembl	4,640 nt	Select Tool ZFIN BLAST
mRNA	ptprub-204 (1) Ensembl	Ensembl	4,658 nt	Select Tool ZFIN BLAST
mRNA	ptprub-205 (1) Ensembl	Ensembl	4,628 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations