Gene
gpatch8
- ID
- ZDB-GENE-030131-6966
- Name
- G patch domain containing 8
- Symbol
- gpatch8 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Description
- Predicted to enable metal ion binding activity and nucleic acid binding activity. Predicted to be active in nucleus. Orthologous to human GPATCH8 (G-patch domain containing 8).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa769 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Length | G-patch domain | Zinc finger and G patch domain-containing protein | Zinc finger C2H2-type |
|---|---|---|---|---|
|
UniProtKB:A0A8M9P7I3
|
1435 | |||
|
UniProtKB:I3IS56
|
1498 | |||
|
UniProtKB:A0A8M9P7K7
|
1419 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
gpatch8-204
(1)
|
Ensembl | 569 nt | ||
| mRNA |
gpatch8-201
(1)
|
Ensembl | 7,025 nt | ||
| mRNA |
gpatch8-205
(1)
|
Ensembl | 4,393 nt | ||
| ncRNA |
gpatch8-003
(1)
|
Ensembl | 421 nt | ||
| ncRNA |
gpatch8-004
(1)
|
Ensembl | 572 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-254P5 | ZFIN Curated Data | |
| Contained in | BAC | DKEY-260C8 | ZFIN Curated Data | |
| Encodes | EST | fa12a04 | ||
| Encodes | EST | fb30h12 | ||
| Encodes | EST | fj32a09 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001328037 (1) | 5855 nt | ||
| Genomic | GenBank:CR388062 (1) | 153088 nt | ||
| Polypeptide | UniProtKB:I3IS56 (1) | 1498 aa |
| Species | Symbol | Chromosome | Accession # | Evidence |
|---|---|---|---|---|
| Human | GPATCH8 | 17 | Amino acid sequence comparison (1) |
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314
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