ZFIN is now using GRCz12tu for Genomic Data
Gene
smndc1
- ID
- ZDB-GENE-030131-614
- Name
- survival motor neuron domain containing 1
- Symbol
- smndc1 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in Cajal body; cytoplasm; and nuclear speck. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus. Orthologous to human SMNDC1 (survival motor neuron domain containing 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:56173 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Survival motor neuron, Tudor domain | Tudor domain |
|---|---|---|---|---|
| UniProtKB:Q7ZV80 | InterPro | 237 | ||
| UniProtKB:B2GRC5 | InterPro | 237 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
smndc1-201
(1)
|
Ensembl | 1,440 nt | ||
| mRNA |
smndc1-202
(1)
|
Ensembl | 2,152 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers